Detailed information of ENSOFVP00000006773.1 in Cyphastrea salae

Genomic Location: chr11:2116611...2121111
NR annotation: XP_020614592.1, transcription initiation factor TFIID subunit 9B-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9HBM6Transcription initiation factor TFIID subunit 9B OS=Homo sapiens OX=9606 GN=TAF9B PE=1 SV=1
Q5R7P7Transcription initiation factor TFIID subunit 9B OS=Pongo abelii OX=9601 GN=TAF9B PE=2 SV=1
Q6NZA9Transcription initiation factor TFIID subunit 9B OS=Mus musculus OX=10090 GN=Taf9b PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007157 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02291
all species →		TFIID-31kDaTranscription initiation factor IID, 31kD subunitDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009072
all species →		Homologous_superfamilyHistone-foldInterproscan
IPR003162
all species →		FamilyTranscription initiation factor TAFII31Interproscan
IPR051431
all species →		FamilyTranscription initiation factor TFIID subunit 9Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48068
all species →		TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046982
all species →		Molecular Functionprotein heterodimerization activityInterproscan
GO:0006352
all species →		Biological ProcessDNA-templated transcription initiationInterproscan
GO:0000124
all species →		Cellular ComponentSAGA complexInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0005669
all species →		Cellular Componenttranscription factor TFIID complexInterproscan
GO:0016251
all species →		Molecular FunctionRNA polymerase II general transcription initiation factor activityInterproscan
GO:0043966
all species →		Biological Processobsolete histone H3 acetylationInterproscan
GO:0051123
all species →		Biological ProcessRNA polymerase II preinitiation complex assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSOFVP00000006773.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cyphastrea salae tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cyphastrea salae, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP