Gene detail

Detailed information of ENSOFVP00000007108.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020629701.1, protein C9orf72-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000007744

GCTAGCTTATAAAATGAGTCTTTAAATGCTAAAGCAAACCCTGGAAAGGCTGTGTCCTTGTGTTTATCGCACAGCATGACTGATACGTCTAAAGCAAAGGAGTGTCTGGAGGAGAGCGATACGAGTTTCTTGACGAGTCCTTCTGATGATGGCTTCCGGTTTTCGAATCTTACGACAAGTCACATGTCAATGCTTAAAGAAAGCGGGCCTTTTATTGCTATAGTGTTGTCCTATTGGGATAACTTATTAGGACCGAGACTACAACACGTGTGGAGAGGAGCGGGAGACACAGAGTCTCAGGAAGCAAGTGTTAAATATGTGGTGGGCCGTACTCTTCATGGGGAGCTATTGAGAGATGCCCCTGAAAACATGGTGGACACTAAACTGTTTGTGCTTAAGGATCATGGCATTGTATGCCATTCATTTATTTTCTCTGGCTGTGACAAGTCTGGTGCCAATGTTTCTGGTCTTTCCCTCATTATTCCATTCTCAGAATTCAAGAGCTACTTGCCTTTTATTGAGCTTGTGGAAGAACGAGTAAAGATCCTCATAGCAAAGCTGAGAGTTTTGCAAGCCAAGGATTTATCATCTGCTTTGCCTGCATTCAGTGTGTATCTACCACGCTTCATTCAGACCATTACAAGCCTTCAGACAACAGGCATCCCTGAGTCAATTCCATTGAGTGAGACTGCCTTTGGTCCTGGACAAGCTAGCATTTTTGATGACCGTTTCTTAAGAAGaGTCATCACATCACATTTACAGACATTTGGCAGTACTCTTGTTGTAGGGAAAGCCTTGGACAAAGTCAACTTGATGGTTAACACCTTGGCCTTACTGTTGTCTGTTGAGGAACGCAAGCGATCAAGATACGCAGTAGAGACTTTGTCCAATGACTCGGACTTGTATGATTCTGATTTGTTTGTTCAAGGCTTATTAAAGAGTTCCAAGGAATCATTCAGTCTTCCAGTGAAGGGAATCATCACTAGCAGTCTCCCCAGTACTCTGGTTGACATGGATACAGGGGAAGTCAAACAGACGTGCCCCTTTAACGAACACACTGTTATCCGAAGAGAGTTTATCGATATCGAGCTGGCGCTGCTGTTAGAGGAGGCTCAAGATGTTCCAGTGTTTCCAGCTCTGGGGTTATTTTACAACTCAGAGGATATCGCACTCTTGGTGCAAACGCTCATGCTCGATCTTAATCTTCTCCCGTACGTCTGTGGTGTCCGTGAAGGATTCATCGACAATTTTTTACGCCTTCTAGACCGTAAAGCTTTGGCGCTGATTAAATACTTGGAAGCTAAATCGTCGTGTGGCACAGTTCCCTTGGATGACGTTGCTAAGCGACAGTTACGTCAAGACTTGCAGCTGGGTACAGAAGCTGATTACTCCATTGTATTGACCCGCGCAGAGAAGCTACATCCGGGAATTTACACCTTTTTACAGGGAGATCCCCGGCAAAACGTGGCTCGTGTCCAGGCCCTTTTTGAGACTCTGTAGTGTTTTCTGAGGAAGTGCGCTTTAAAACATAAGGAAGTAAAAGAAATCCAAGAATTTTCCGAGAAGCGTGACGACGACGAAGATACAGTTCAACCCCGTTCCATGGCTCCTTGGAATGAGGCTGTGCGTTTGAATAGTTGTTTGCTGAATTATTTGCCAAAACTGCTTCAATGATTTCATAGAATGTAGTTAAGACAGGACAATACCATAAATTGTAAATTGCGCAAAGTGTTTATGCTAAGTGTCTTCTACTTGTCTCCAATCATTTcttaaaagagagaaaaaaatttaTTAAATACAACCGAACCTCCACTAACTGCGACCTCCCAACAACGGCTACCTCGCTGCAGCAGCCACTTGTTTTTTGTCTCAGCGGGcggtccatacattcactcttaccGCTTAAcatctctacaacggccacctctccgCAACAGCAGCGGCCTCTAAAGTGCGTGAATACCCAACGCTCCCTACCTCTCCCCTACCGACTCCCCTATTCCCAATAATATCTTTTTATATTTCGAGCTGATACCTGCTCTTCGATTTCAGATCGCCAACACttgtaacaaatatttcttgagACAATAAAGTTGTGACCAGCGACCCTGCAAGACAGCGCGCTCGTCGCCAAATGTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96LT7	Guanine nucleotide exchange factor C9orf72 OS=Homo sapiens OX=9606 GN=C9orf72 PE=1 SV=2
Q6DFW0	Guanine nucleotide exchange factor C9orf72 homolog OS=Mus musculus OX=10090 GN=C9orf72 PE=1 SV=2
Q66HC3	Guanine nucleotide exchange factor C9orf72 homolog OS=Rattus norvegicus OX=10116 GN=C9orf72 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005942 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15019 all species →	C9orf72-like	C9orf72-like protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027819 all species →	Family	Guanine nucleotide exchange factor C9orf72	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31855 all species →	GUANINE NUCLEOTIDE EXCHANGE C9ORF72	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23609	C9ORF72; guanine nucleotide exchange protein C9orf72	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.