Gene detail

Detailed information of ENSOFVP00000008557.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020602985.1, DNA repair protein complementing XP-G cells homolog [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000009263

ATGGGGGTGAAAGGTCTTTGGCAGCTCTTGGAATCCGTTGGCCGGCCAGTAACATTAGAATCTCTTGAGAACAAAGTTCTTGGAGTTGATGCCAGTCTGTTACTGAATCAGTCTGTAAagggaatgcgtgacaagcATGGAAACCCAGTTCCTAATGCACATCTGGTTGGCTTGTTCAATCGTGTTTGCAAACTGTTGTATTACAGGATTAAACCAGTTTTTGTCTTTGATGGAGGAGTTCCTCATCTCAAGAAAAAGACACTGGCTGCAAGAAAAGAACAGCGATTTAAAGCTATCCATAAATCGAATAGAGCTGCAgaaaaaattgtgaaaaattACTTGAAGGCAAAGGCTCTTGAAAccgtaacaaaacaaaaaaggtaTATATGTACATTTGAAGTCCTAGTGGTAGTTTCTAAATCACATGACATCAGTCTATCAATTGAGTTTTCAAGTGGTTTGGGTTTTTTTCCATTGGTTACTTTCTTTTTTGCCTCCAAACAGGAAACGTTTCAGGATCCCAGTGAAATAAACATTGATTCAGAAGACTTCAAGGCATTGCCACCAGAAATTCAACATGAATTGATCAAAGAGGTACAAGAAGAAAGAAAGTGGATGAGAACTGACTTTTCCAGCTTTCAACTGGAAGCAGTACTAAAGCGGGGTAAAATGAACCAGCGACTTGAAGAACTCTACAAAGAAATGAACGAACGACACTCTGGAGAGCTGGCAGGAATTGCATCTGAAGACTCCGTAGGAGAAAACACTGCTGTTAAATCGCAAAAGATTTTGTCAGAAGACAGCTCTCACTATATCCTAATAAAACGAAACGAATCACAACAGGCTGACAAGCAGGATATTCGTAATGAAGGTCAAGACTGTGAAATAATAAGTTGGACAAATCCACCGCCCAAGCCATCGCCAACAGCAAAAGCTCCAAGCTTTGATATTCCTGAACTTTGTTCAAGCGACTCTGAAAACCTGTCGCCTTTCTTGGATGTAGCAGAAGTTTGTCTTTCACCCACAAGTCCTCAAGTGAAGAAGAACTCTTTTAGTTTTTCTCCAGTGAAGATTAAGAATTCACTTCAGAACGCTTTGTTAGGGAAAGGTGATAATGTTGTGGAACAGGAAGAGACCCAGGAACAGATGCCTCAAAGTCGTGACGACCTTAGATCAGAACATGAGCCAGATAAATGTGATCTTGAAGATTCTCACTTAGACCAGCTTCCTCGAAGAAGCAATCCAGCAATGGAGGTGATCTTTGCGAAGGATTCTGGTGAAGATGGCGAACTGCTCACTCAAATTAAAGACAAGAAAAAAGAGCTTGATGATCTTataaagaaatggaaaaacTCAAAGAATCAGAAAACTGTCATTGATTTAACGGCTAGTGCAGGTGATGGAGGTAATATTGCAGAAAAGAAAGAGCTGCCTCTTGACAAGTCGGACAGTGTCGAGGTTATGGAAACTTTAGAACTGAAACAGCAGGAGTGCACCAATatgaaagaaacagaaaacttGCAGTCAGCTTTAGTTGTTGATGATGAGACGAAGGGACAAGAAAAAGTTATAGATACAGTGTGTATTATTGAAAGTGAATCTGAAGCTAGTTCAGTGGAAGATGTGACAGCTTTGGTTAAACAAAACGATGGTGTTGTTGAAGATAGAGAGAGTGATGTTTCGTCAACTTGTATGCAAGAAGTTGAACCCACGATCTCAACAGATGCTACTAACGATGTTATTAAGGACAAATCCAATGCAATTTCTTCTGATGCTTCACAAGAAGTTCAAGCCACACTCTCAGAAAATGCTGTGATTGATGTTATTAAGGATAAACAGAGTTCTATTTCGCCTGGTGCTTTAGGAGATGTCCAAAGCACGCTCTCACCAGATGTAACCACTGAGGCAGATCAAGACGTTTTACATCTTTCTGGAACGCAGAAGGACGCTCATTTAGATGTAAACCGTACTTTTCTCTTTCAGGAAGAGTTGGAAGACATTCGAATGGATCTTGAATCTGAGCAGAAATCTCTAGCGTCAGAACAAGCTAGACAGAACCGTATAGCGGCCACTGTATCCAGTGAGATGTTCGCTGAATGTCAGGAACTCCTCCAGTTGTTTGGTGTCCCGTATCTAATGAGCCCTATGGAAGCGGAGGCCCAGTGCGCAATGTTAGATGTGCTCGAGTTAACACAAGGCTCCATCACGGACGACAGTGATATATTCTTGTTCGGCGGCAGACGGGTCTACAAGAACATCTTCAACCAGAATAAACATGTGGAGATGTTCGAGAGCGATGCGGTACAGAGAAATCTTGGTAAATTTGGtgaccagctcccaaTTGGCTTGATAACTCAGTtagtagagcactgcaccggtatcgcggagatCATGgcttcgaatcccgttcagttTCATAACTGTTTAAGTTGTATCTATATCTggaatcatgtcttcatatctttcagATTGTGGCACGAGGAAGTGCAGAAGCGAACAAAGCATCCTCTAGAAACTAAAGTCAAAAGGAAAATGAGGTCTGTGGTACTGCCGGCTGATTTTCCATCTGAGGAAgtgtttgaagcttatctgcaTCCGGTAGTTGATGAATCAACGGAGTTGTTTGAGTGGGGAAAACCAGACCTGCATTCTCTTAGATTATATCCTTTGAGTTCAAAAATGCTTGGTTGGCCTTCTTCAAGGACAGATGAGATTCTACTGCCAGTATTAAAACAACTCAACAAGAACGAGGCGCAGATGAAGATTGATCAATATTTCCAAGTGAAGTTCCAAGATAAGAGAAAAGTTAAAAGCAAACGGATTCAGCGAGTGTTGAATCGAACGTTTAATCCCTCGAGTAGCAGCAGCGACAGTGAGGACGGAGGTGAAAATAACAAGAAGCACGAAAAATGCACTGATAAAATAGCTAGTAAAACGACGCACATAAAGAGGATTCCAGAGAAAAAGAGATCTCACTCAACAGAAGCGAGTATAGGCGAAGAGGAAGACGAAACTGGTGTAAATCGAGTAAAACGCGCGAAGGGAGAGAACGACCAAGTTGGCGCATGCTCTCCCATGGTGAACCGCTCTAGGGGAAGATTTAGAGGTCGGGGACGCGGCCGAGGGAACGCTCGCAAGAGCAATAGTGCTGCTCCTAATTTGAAATCTTCTGTTGAACAAAATTCTGAGAAATCATCCTATGAGCAAACAAGCAAGCGAACCTCGCTGGAGAATCAGAAAGACTCTATCAGTAAAGGTAGTAATCAGAAAACTCGGAGAACTTTCGCTCGGCCTTCAACATCTGCTAATAACGGAGTAGATGATGTGTCCACAAACAACGTAACAACAAGGAGAAAACTGCGCAGTACTTCTGCGAACAGGCGCGGGAAAAAACGCGTGGACCTTGTCGGGGAAGAAACTTCAACTTCTGATAGTACAGATAGTGACGAAAACGATGCGGACTTCTATGTAGGACCAAAACCCGTGTCTGTATTCCGACGGGGCAGGGGAAGGGGCAGGGGAAGGGGTCGAGGGAGATAA

Transcript

ENSOFVT00000009263

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28715	DNA excision repair protein ERCC-5 OS=Homo sapiens OX=9606 GN=ERCC5 PE=1 SV=3
P35689	DNA excision repair protein ERCC-5 OS=Mus musculus OX=10090 GN=Ercc5 PE=1 SV=4
P14629	DNA excision repair protein ERCC-5 homolog OS=Xenopus laevis OX=8355 GN=ercc5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002893 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan
PF00752 all species →	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR019974 all species →	Conserved_site	XPG conserved site	Interproscan
IPR006085 all species →	Domain	XPG, N-terminal	Interproscan
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan
IPR001044 all species →	Family	XPG/Rad2 endonuclease, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16171 all species →	DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0004520 all species →	Molecular Function	DNA endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10846	ERCC5, XPG, RAD2; DNA excision repair protein ERCC-5	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.