Gene detail

Detailed information of ENSOFVP00000010744.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020624664.1, histone H2A deubiquitinase MYSM1-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000011600

ATGGCGGAATCAGATGAAGAAGTTGATGTCGAAGATGTTTCCGATGGCGAACAAACAACCAATTTACGAGGCTTGGGCGATGACGATACAAAGGACAAATGGTATGATAAAGACATTGGCAACCAGAGTTTTTTGAATTCTTCCAGTATCCCGTTTTCGTCTGAGTATTGTGATCCTAATTCGTGGCTTCTGGATACAAACTCGGTTTGGTCCTTGGATCCTTGTACAGATGACAAAACCAGGTCAACGATTGAAAAGATGATTTTAGAAGAACAAATGTATGCCTATAGGTCAGTATCAGTCAAACTGGAGCACCCACCAGCAGAATCCAGAATTACTAATAATGGGTTTTCAACAAGttcaaatattgcttttttgtacAGGGATCAGCAGCCGTCTGTGACTCACAGGAAACCCTGGACAGTTCATGAACAGGAGATTTTTGAACAGGGTCTGGGGCTGTACGGACGTAGCTGGACCAAGATAGCAAATATGATTGATACTCGAACAGCTCTCCAAGTGAAAAACTATGCCAAGCAGTATTTTAGACAACAGAACAAAGCTCTCGCGGAATCACAAGCAATACAGGGAAGTATAGAAGAACAGTCCAAAGACAGACTTGTCTTTGCTGATGTAGAAGATGCGGTAAATGAAGATGGTTTTTTAGGGGATGAAAAGGTCCTTCCGCCTACATTTGCATCTTCGCCTGTTTGTAAAGACAGACTGCAGAATGAATCAGACGAGGATGTTGAAGTAGATATTGATGGATCAGACAGCGATGAGGTCAACCCTTGTTTAATTCCAGGTCAGACTACGTCATGCCCCGATGCTGTTTATTCAGCTCTCGTTCGAGCTGCAGCTGTGGAAAATCAGCAGGTGAAATTAGTTCATCCACTAGAGCCAGAAGGAAGTGCTTCTATTATCCTCGATGTCAAGCGTCCATCGATTGAATATGATATTCCTGAACTGTCCTGTTCAAGTTTGTGTGAGAGGACCACTAATCCTAGTGAGGAAAGTACACTAAATGACAAAGAGATAAAGAATAATATGGATCACACAGATAACTCAGTTTATTTGTCAGAAGATGACTACCATTTGACGCAAGACTATCCACAAGGTTTGCCTCTTGAGGGTAAACCTTTTCCTGATGACATCCTGGAAAATGCTCGGTTAATAAACGAAGATACGACCGGACAGTCTTGTGAGATTGTGTCGGGTGAAAAATCCACTGTTAATTTCGCTAGTGTTAACAATACTGCACTCGATGTAATCGCTTCCAGTCCACAGCAACCATTGCCCAAAGACAAGGATTGGGCGCTAGTGACATGTGGTGAAGCTACCAGCTCTGAATTCATTGAGTCCTCGGACCGTGAGCAGCCTAGAGCAAACGTCAGCTTTGATAATCCCATTGTTATTGACAGAAATGTTATACAGGACGTAGAGAAAGAACATAATACGGAATTTTTTATGGGGCGCGCTCTTAAGACTCCGGAAAGATACATGAAAATTCGCAACTATATTCTTGACATGTGGGAGAAAACTAAaccaaattttcttttcaaaacggCCGTGCGAAGCGGTCTTCGAAACTGCGGTGATGTAAACTCTATCGGTAGAGTACACGCTTTCCTGGAGGACATTGGAGCTATAAACGAAGGGTGTCTTGAAAGACCGGTTCCACGCGTTAGAGAGCAAGGCGAGGTCACCAATGTAAAGGAAAACTTTCACATGGAATCCTGGGTAAATTCGTTAAGACCTAGGAAGAAGCGACAGAGAAATATGGACGGAGACTGGGTCGACTCAAGCAAAGCGGAAGGGATGACGATACAGCATTTATCTCCAGACGAACAAGTTCAACAAGACGGGGTCCTTAATGAAAAGGGCTTTCCGTCAGTCCCCAGGAAAAGATCCTCCCGAAATAAGCCCTCCTACGACCCGTTCCTTCTTGTTCCGTGCCGCAAGTTCCTAACACGTGGTTCTGTCCCTTTCGATGTGCTTATCCAATCAGAAACCTTGGTGGTCATGGACACGCATGCGCATATGTCAACTACCGAGGTCATTGGTCTTTTAGGAGGCAATTATTCGCACGATTTAAGGAAATTGAAGGCAATACCTTGTCGGAGTTTAAGCACAGGACTGCAGTGTGAAATGGATCCTGTATCCCAGACCCAGGCCTCTGAGGAATTGGCTCTGCGAGGACTGGCCGTTGTGGGCTGGTACCACTCACATCCAACATTCGCTCCCATTCCTTCTGTTCGTGATATTGAGACTCAGGCCAAATTCCAGGAATGGTTTGGAAAGGGTGGCGCGCCGTTCATTGGAATCATCGTCAGTCCGTACAATTACAGTAATGTCTCCAACCAATCACAAATAAGGTGTTTGACAGTTAGTGACGAGTGGGAGTCTGCTGGCCAGTACAGATTGCCGTATCAATTTGACTACGAGGTGTTCGGAGATGAAGCTGACGAGGACGACACGGTGGAACAAGTTAGAAGCATAGCGGATGACTACAGAAGATATCCCTTtCGGGTTCAACTTAACAGACGGTTTGGGGCCTCCTCGAGCCTTGACCTCCTGGATAAGCTGCTGGATTCTTTACGGGCTCGAATCAACAGCACATCGGAtgataaaaaagaaacattctTGGATAGGTTGAGGAATACTATCTCTGAAAATATCAAACTTCAAACACCCATCCAAGATAACGAACAGAGAGAACACACCTTACAAGAATGA

Transcript

ENSOFVT00000011600

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F3F2	Histone H2A deubiquitinase MYSM1 OS=Gallus gallus OX=9031 GN=MYSM1 PE=2 SV=1
Q69Z66	Deubiquitinase MYSM1 OS=Mus musculus OX=10090 GN=Mysm1 PE=1 SV=2
Q5VVJ2	Deubiquitinase MYSM1 OS=Homo sapiens OX=9606 GN=MYSM1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008480 (this species only)
Transcription factor family	MYB · all TF in this species
Ubiquitin family	UBD\|Other\|Jab_MPN · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR050242 all species →	Family	JAMM/MPN+ metalloenzymes, peptidase M67A	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10410 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11865	MYSM1; histone H2A deubiquitinase	EC:3.4.19.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.