Genomic Location: chr14:19230053...19231118
NR annotation: XP_029180051.1, U6 snRNA-associated Sm-like protein LSm5 [Acropora millepora]
Species Cyphastrea salae · all data for this species · gene families
| CDS |
| ENSOFVT00000011913 |
| Transcript |
| ENSOFVT00000011913 |
| Protein |
| ENSOFVP00000011012.1 |
| UniProt accession | Description |
|---|---|
| Q2HJH0 | U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3 |
| Q9Y4Y9 | U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV=3 |
| P62322 | U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010345 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01423 all species → | LSM | LSM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001163 all species → | Domain | Sm domain, eukaryotic/archaea-type | Interproscan |
| IPR010920 all species → | Homologous_superfamily | LSM domain superfamily | Interproscan |
| IPR033871 all species → | Domain | Sm-like protein LSm5 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR20971 all species → | U6 SNRNA-ASSOCIATED PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005688 all species → | Cellular Component | U6 snRNP | Interproscan |
| GO:0046540 all species → | Cellular Component | U4/U6 x U5 tri-snRNP complex | Interproscan |
| GO:1990726 all species → | Cellular Component | Lsm1-7-Pat1 complex | Interproscan |
ENSOFVP00000011012.1.
