Gene detail

Detailed information of ENSOFVP00000011410.1 in Cyphastrea salae

Genomic Location: :...
NR annotation: XP_020617690.1, very low-density lipoprotein receptor-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSOFVT00000012384

ttccgctcaggttgtcgaaacgtcagtcaccaacaacagttcttttcagaactacaccgaactacactcacccggacgatcacactatacgaactattTCTTTCTAAGCTTGAAATCTTGACGAGCGTGTGTACAAGAGCTGCAGTTCAACGCAGTACAAATGCGATAACCAACGATGTATTCTGTCAAAATGGCAGTGCGATGGTTACGATGACTGTGGAGACAATTCAGACGAAAGAGGATGTCACGAGGCTACGTGTGATCCGTCACAGTTTCGTTGTGTTGGAAGCGGCAGGTGTATTCGCGGCTTGTACAGATGTGATGGAAGACGAGATTGCTTGGATGGCTCAGACGAATTAGCCTGCAATACTCCAGTGATAGTcagacccaccccacccccgcCAAAATGCCGGAGAAATCATTGGCTTTGTAACGACAGAAGCAGGTGCATTCACCGGAAGTGGATTTGCGATGGAGCCCAGGAGTGCAGTGACGGAAGTGACGAAAACAGCTGCGCTTCTCCCACCCCGCGTGTTACTACTACCATCCCGACAACACTTAAAACGTCGCGGCCGGATCCCACAGTACCAGTTGATGTTAATTCAACTACTCCATCTTCGGTGTGTAAAGCAAATCAGTTCAGATGTGGCAGCAGCCTAATCTGTATTGAAGACAATAAAGTCTGCGACAGACACCCAGACTGCCCACATGGAGAGGATGAGAATAACTGCGcTGTTACGCCTTGTTCAAAGGACAACGGAAATTGTTCTCATCTTTGCCTTATTTCATCGGAAAAGAAAGTTAGCTGTAGCTGTCCAAATGGGCTTTATCTTCAGCTTGATGGAAGAACGTGCAATGAAACTGTTCCGCCAACTAGCAAGCCCACAGCAAGTTCATCATCAATAGTTTCCCCTGTCAGTGTAAACTATACCACTCCCTCGGTTGTTATAAAGCAACAAAATCACAAAGATGGCGGCAAATCAAACGCTAGCCTTACCATTGGACTTATATTCGGTGGCGTGGCGCTTCTCGTTGTGGTCGTGGTTATTGTTCTGTTTATCGTTGCGAGGAGGAAACGGTCGCCAAAACTTCAAATTGTCTATACTGTTGACACTGACTCAACAGACTGACTCAACAGACGACAAAGCTACCATTTTAAAGAGTATTTACAGTAGACCAGCAGCAAGCAAAGGCAATGCCAATAGGCACTTTGACAATATCAACTATGAAGAGCACAAACATGTGGAATACGACGAGGACAATGTTGACGAAAGAAGTCCAGTCATTGTAAATGGAGATCTAGTATGATATTGCCCGACAGTGGCTTGTATAAATACCATATTCCACCACTGGTCAGGCCCATCGGATGACGTGCAGTGGAGAACAACTTTCCTCTCCCCCCGTCTCTGCCCTGTATTCCCTTAGTTTTTAGGAGGACGTAGAACAAGACAGGGCTACTTGGTAAAGGAGGAGTGGGGTAGCTTGGTATTAGGGCTGATTAGGTCTTTGCTTTCATTCGTGGACGTTTTACTCCGCGATTGAAAGAAGATGGCTTGATCTCATGTGCCAGAAACAAAGTTGAAATGCAATTCATAGATATCAATATCAAGCGAGGCTAAAGTAATAGTATTGTAGTGGAATATTCTCGTCAAAAAGAGTTTATTTTGCTAATTCCATTTAGTTGAACAGATGTAATAACTGTGTTCGCAGTGAGTGAGAAAAAAGTATACGATCTAATTTATTATAGTACGTAAATTATTGGGATCTTTTTAGAGAAGTGTACCTACTGTCGGCTAAAATGAGAATATTATTTCTTTCCCGCCATTGGCGTTAATTCAAATATATATATCGGGATAGATGTTATAGGTTAACTTAACACTATTTCAAATATTTGCCCGTTGAAATATCCTGATGAACTGGTTTGGACAAGACCTGTAGATACCCTGTCGAACTGGTTTGGGCATCAGCTGGCTGTATGTTCGAAAACAGATTAATTCTCCCGTAGTTTATAACATCGATAATGGCCTTGATTTGAATAGAGAATAATGgtttaattttgtaaacaaaatttgtGTGTATAGCAACAGATACGC

Protein

Uniprot

Uniprot term	Description
Q9QYP1	Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus OX=10116 GN=Lrp4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan