Gene detail

Detailed information of ENSOFVP00000011753.1 in Cyphastrea salae

Genomic Location: :...
NR annotation: KAJ7386429.1, hypothetical protein OS493_008557 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSOFVT00000012743

TACGCAGATGGTACAGACATGTTGCTCTTCTGTTGGGTTTTACCATGAGGAATGTGGACGCTCGATGTAAGACTATGAGACCTACTAGTTTGCTGTCGCTTGCTCTTCGTAACTCTATGAACGTGATCTTTACGCGATATGTTCACAATCGAACTTTCTCGAAGAGAAAATCTCTATATGATGTGTTAGACGTGTCGCACACGGCAACACAGGATGAAATTAAAGCTGCATATTACGAATTGTCATTGAAATACCATCCTGACATGAACAAGAGTGATGAGGCTCAACACAAGTTCCAAGAGCTAACAAATGCATACAATGTGTTGTGTAACCTAACGTCAAGGAGAGAGTATGACAAGGAAATTGGAACATACTTCACCATGAGGAGTACAAAGAAGAAGCAAACTGAAGAGAAAGTTCTACGACTGACGGATGAAATGATGGAGATTGACATGAAAGGGATTAGACAGAGTCGAGTGTTCCTTGGAACCATTGCAACTCTAAGCACCATAATGGGTATCCCAGTAAGACTGATGAATGTGTCTGTATCTGATGGAGGCATCCAGTCACATGATATGAGAGTATTACAGCTTCTGCGGCAAATCTGTGGTGGGACGCTTGCAGCAAGTACAGGACTATGCATGGTCACATTTGTACCTGGAGACTTGCTTCCTGGGAATTTCTCAGCAGAGGCTGGAAGGCTGGGAGACTTGAGTCATTTGGTATCCTCTGCTCTCCCATGCTTTCCATTTGCACCAGTTCCTGAGTACACCAAATTTAACAGACTCCATTTAAAAGGTGCAACACATCCTTACAGGAAAAGTCTTCATGCAGACTACATCCAAAGTGTTATGATGCCATTTATTGGGAAATTTGGATTTGATTTTCACTTTGACATCCGCAAAAGGAGTTATCACCCTTACTGGGAGGGTAAAATCTGTGTAGAAAGTCTTCCAGTTCACAATCTGAGTTCTGTTGAAATTACAGACAGTGGTACTGTGAAGAAAATAACAGGGAGGGCATTTGTCGGTGGAGCAAAGCCTATAAGGATTGCTCAAATAATGGCAAAAGAGGTGCATCAAATCTTAAAGCATCATTTCCCTCACGTACCAGTGGACATAAACAGCCAGAGAAACAGAGAAAGCAGAAGTGAAGGAACAGGGCAGGGGCTGATGATTCTTGCAGAAATGTCCTCTGGTGTTGTATTAACAGGGACAGGAATGTGGGAAAAAGGAATGTCTCCTGAAGAGGTAGTCAATCAGGCTGTCAGAATGCTGATAAAGAATGTGAATAGCGAAGCATGTATAGATTCTCTGTTACAGGAACAGGCTATTATACTGATGTCACTTGCAAGTGGAAAATCATCTATAAAGATGCCACGCCTGACAAATCAAGCAAAGGCTGCAATGCTGGCTGTAGAGACCTTTACTGAGGTCAAGTTCAATATCAGTTCCAAAACAGCAAAGAATGTAGTGGTGGAATGTGAAGGTCTAGGACTTGTTAATGAAGAAGTTCTACCTGAGGATAATTATAAATCAGATGACGAGGATAAATCAGAAGATGAAAATGAGTCACGTGATAAACGTGTATCAGATGATGAACACGAGTCAGATCACGAATATGAATTGGATGAGGAACATAGGAGATTATGATATGACATCTGGATATCAAAGTCGACTACCCAGAGTTGGAAGTGCTGATTTTCCTGCAGCAACAAGCCCAGCCTTGGCAGACCTGGTTATACTGGATGAACTGGGCCCAGCCAGAAGAAGGACATGCAGTTTTACTGTCTTCCAAAGACCTCGCCTTTGACTTCACCTGGAAGGCAGGCACGTTTCTTGAGGTGCGCTTTTAATGCCTGACCTTCTGTAACTGCGTCTTAATGGCATAACCTTCAGGACGTGCGGTTTTAGCGCTTTCAAAGTGACTGGCCAACGGGTTATGTGGTCTTCGTGCCGTAACCCAGTCTACTACCTGGAcgctgtttttgtgtcttgcCAACCTCTGTTGTCAGTGTCGCATTAAACATAGATTCCCAGTTGATGCCAACTGCCTGGGAGTTGGAACACGTTATGATCTAGGACAAGACGGGACCATATTAAAGTGAAAACGTCGAGGGGTGTTGTTGTTAAGAGGCTGAGCCTGTTCAGTGTAAGACCGTTTATTTTTCTTACTGCTTAAAGAGTCATTAGGTACGTAAGTGTCACACCAAGTCAAAGAGGATAGGTCACACAGAGTTCTTGACGAATTTAGTAATGGAAATGCACGTAGGAAAATTTAGAcaagtataaatattaaattattccaaataaaattgttttaagtAGTAGACGAAAAGTGTTTCTCCGCTCGATTGTCAAAAATGTGAAGTTTGCA

Protein

Uniprot

Uniprot term	Description
Q2HJ88	RNA 3'-terminal phosphate cyclase OS=Bos taurus OX=9913 GN=RTCA PE=2 SV=1
Q4R3J0	RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis OX=9541 GN=RTCA PE=2 SV=1
O00442	RNA 3'-terminal phosphate cyclase OS=Homo sapiens OX=9606 GN=RTCA PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05189	RTC_insert	RNA 3'-terminal phosphate cyclase (RTC), insert domain	Domain	Interproscan
PF01137	RTC	RNA 3'-terminal phosphate cyclase	Domain	Interproscan
PF00226	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013791	Domain	RNA 3'-terminal phosphate cyclase, insert domain	Interproscan
IPR037136	Homologous_superfamily	RNA 3'-terminal phosphate cyclase domain superfamily	Interproscan
IPR036553	Homologous_superfamily	RNA 3'-terminal phosphate cyclase, insert domain superfamily	Interproscan
IPR001623	Domain	DnaJ domain	Interproscan
IPR023797	Domain	RNA 3'-terminal phosphate cyclase domain	Interproscan
IPR000228	Family	RNA 3'-terminal phosphate cyclase	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR018253	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR013792	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11096	RNA 3' TERMINAL PHOSPHATE CYCLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003963	Molecular Function	RNA-3'-phosphate cyclase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01974	RTCA, rtcA; RNA 3'-terminal phosphate cyclase (ATP)	EC:6.5.1.4	Enzymes with EC numbers	-	deepkoala