Gene detail

Detailed information of ENSOFVP00000012247.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020621212.1, KH domain-containing, RNA-binding, signal transduction-associated protein 3-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000013252

TCGGTTGGCGCCATTTTGTGCAGTTGTAGTTGATGTAGGTTATATTTCAGCTGGATTTTGTTTCGATTTCTCCATCATGGCTGCAGAAGGTGGCTATCTTACCGAACTTCTAACTGAAAAGGACAACTTAGACCCGTCTTTTGTTCATTCAATGCGATTGTTAACCGAAGAAATCAACCGAATGCAAAATGGTGGCACCCTTCCTGTTGGACAAGTAAAATTAAAAGTAGAAAAGACAACTAATGGAAATGCTATACCACCTGCATCAGAAAGTCCTGTCGTGTCCAAGCCATTACCTGCTGCTGCCCAGTTACCTGCCGCTCCTGTCGCAAGTCCTGAGACTCCTCCGCCTGCCAGGATACCACCCCATCAATTTCGTAGACCCGTTGATGTTTTTGATAGCAAACTTTATCAGCCCACGAAATTGAGCGAAAAAGTCTTCATCCCAGTTAAAGACTACCCTAAGTTTAATTTCGTTGGAAAACTGCTTGGTCCTAGAGGAAACACCTTCAAGAGACTTCAGGCAAATACTGGTACAAAAATGTCCATCCTTGGTAAAGGTTCAATGCGAGAGAAGGAGAAGGAGGACGAGTTGCGAAGTTCTGGTGATCCAAAGTATGCACACCTTGAGCAAGATCTCCATGTTCTCATTGAAGTGGAAGCTCCCCCAGGCCAGGCTCATGCTAGATTAGGTCTTGCCATTGAAGAGATAAAGAAATTTCTTGTTCCTGAAAACAATGATGAAATCCATCAGGAACAAATGAGAGAAATGGCAATTCTTAATGGCATGGAGGAGCCAGCACCCGCAGCAGCACCAGTAGCAGTACCTGCACCTGTTCCCAGAGGACGCCCACATACCAGAGGGGTACCACACCATCCCCACCACCCTGCACATCATGGTCGGGGTGGACCAGTTCCACGGGTGGCTATTCCAAGACCTAGAGGACCCCCTGTTGGTCATGTCAGTGTAACAGCAGCACGCTCTGCAGCAGGACTGGGACCCTCTTCCCCTACAGTGGCTCATGCAGCACCCAGGGCAGCTGCAGTCCCAGGAGATCCCTATGGAGGTTATGAATCTTATGAGCCTAGTTATCAATTTGAGGCAGCCTATCCTGAACCTGGCGAGGCAGTGTATTATGAGTATGGGCAGCCAGGAGAGGTCTTTGAAACAGCATATCCAGCTCCAACCAGAGTTCCAGTCAGTACATCTGCAACTTTCAAGGCACCTCCAGGTCGCACTGTCAAGAAAATTGTTCGTGAAGCAACATACCCTTATTGAAGTAGTTAACAATTTTTCTAGGGTTTCTTGTTTCAAACTGAAACCTTGTTGATAGAATTTTGATAAATTTCTTACAAATTATTATGGACACTTGACCATGTTGAATGTTACAAGGGAAGCAGTGTGCAGTATTAACCATTCTTTTAGTGTGGAAACGACAGTTATTTTCATAGATGTTTTTTAGTCATTACTCTTACTAAACATTGAAATGTTAATTGAATTTCTGTACCATACATAATGgaagaatatttttttgtttatggaGCCTTCAGTAAACTTGGATAAAGAAAGAAGATCGGCATAATCCATTCTTAATCAGTAAAATGCTATTCATTTAAACATTAAAGTTATATTATGGCTAAACATTTACAacataaaaagaacattttcaGTGTTAGAAGCCCTCATAATAACTATTTCAGGCCAGTTTGTTGTTGATGTTAATGTGCTTTTGTGCATTCAAGACTGTTATAAAGTTGTCAAGTTAGGCTTAGTAAGATAAAGTTACCATTGTTCGTAGCCCTTTCTTTTGTAATTGCAgggatttgttttctttgataaCATTTTAAAGTATGTTAAACTGCATGTCAGTGCATGTCATGATATCTGATTCCAAAAATCTTTAACTCCCATGTTTTTGATAAACAAGGGCATTGTCTGCCACTAAATGGTTAAATCTATTAACTTACTTAAAACtttcattttgtttaaaaaacaacTTGTATGTACACATTAAATAACATCTTGAGCTActtgttattaattttttgaaCTCAATAAAAGTGATAAACATTGCTAAACTATTTGGTCTGGCCATTGCGGTTGTTAATAAAAACATGAAACTTTAATCTATAACTTTTCGCTGGAGTGTCTTAACtataaatgaaaattttataGAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VWX1	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens OX=9606 GN=KHDRBS2 PE=1 SV=1
Q9WU01	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus OX=10090 GN=Khdrbs2 PE=1 SV=1
Q920F3	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Khdrbs2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001209 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16274 all species →	Qua1	Qua1 domain	Domain	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032571 all species →	Domain	KHDRBS, Qua1 domain	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR045071 all species →	Family	KH domain-containing BBP-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11208 all species →	RNA-BINDING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14942	KHDRBS3, SLM2; KH domain-containing, RNA-binding, signal transduction-associated protein 3	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.