Gene detail

Detailed information of ENSOFVP00000012904.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020632366.1, poly(A)-specific ribonuclease PNLDC1-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000013928

TGATCAGCCAGTTTGGTAAGTTATGCTAAGTTACTTGAATAtgtttgttttaaatatctctTTTTAATTATTAGTATTCCTTTATGTCTCTTACAGCCAATTGTTAGTCcttaattattttttcacaACTTATTTTATTGCACAGGGTTGACAGCTTTCGTTCAGTCAAAAGAGGATTCCAACAAGATAATAGATGAAGATATTCTGGAAAGATGTTGTGCAAAGATAGAGGAGtgggtatcatcagcaaagGAGGGAGATCAAATTGAGTTAAATCTTGGCAGTTAATCATAAATGCCATGGTTGGTTTTTCTAGAGTGTTCCAAGTTTTAGCAACGTGTAAAaagCCTCTTGTGGGACACAATGTTTTGACGGATCTGTTACTGACGTATGAGAAATTTTACAAGCCGTTACCAGATAGTTTTAAGGACTTCAAATCCGAGCTTCACAGGTTATTTCCTGTAATTCATGATACAAAGTTTATTGCTTTTGAAATACGAAGAAATCCGGTTTTATTGCAATGTAATTTCTTTGATGATACGAACTTAGAAAAGCTTCACGCTGCACTTTCAAGCAAGGATTCCCAGTATTTTGCACTTTATGCACCCTCAATACcgttttcagaaaaatgctacAGATATCTCGACGAGAAAATGCCACACGAGGCTGGGTATGATTCATTCCTCTCCGGTTTTGTGTTCCTACGGATGGCGCATATCCTAGCTTATAAGGTATCAAAGTCTCCAGAAGGACCTCTCCCCTTCTCCAAGTTTCTTCGCGTACTCAAACCATTCGAGAATCTAATTCACTTGAGCAGGGCACGAGTGCAGCACGTGAACTTAACTGGTCCGGACCCACTCTCTATTCGTCCACAGTGGCTTTACGTCACATCTAAAGTTAAGAAGAGGCCTCTTGTTGCTAGGACGTTAGCGCAAGAGTTCTCGCGGTTTGGTTCAGTGGATGTGAAAATTTTGGACTCGCAGCATGCGCTGGTCGCTGTTGCTCAGCACAGAAGAGCAAAAGATGTTTTACGGATCTTCAGACGGCATAAGACGCTCAGTGTTCGACCATACAACTCATTTTTAGATTCGCCCAAGATAAAAATAGTTCTGTGGTGCAGCGGAACCGCTGTGGTGGTCTCGGCTGTCGCAGTGTATTTATGGAAATCTTGGACATAGCAGTTAATAATTTCTCGGGGTCAGGTGTTAAAAGTTCCGAACCAAGATCATTAGTTTTGCTGTTGTGTTatgcttttttttataaatcctcttttaaataaatataatttcttcttctgtttctctaaccgtttttttttctattttccgAGGATTAAACTTCGTGCAAACTAGCAATAGAGATTTCGTCTCCAAGAGGAGTAATTTCAGACAAAGTTAGCTAAGCATAGCGTTCATTATTTAATTGGGAAATTTCATTTTCTAGTCGAATGAATTTTCTTTTATCTCTAACGACTTTTTACCTCTGTAACGATCAAACTTAGATTAAACAAGCAAAACGAAGCGAGCGAAATGTGTTGTCTTTAAATTTACGGTGATATGGGGATTTATTTCGCCCAAAGATGACTTACTGTTTCGTTGGGAAGTTGCAGTTTCGCGTTAAAGGAATTTTCATTTATCGTCAATGCGGTTTTATCTCCACGAGGATAGAATTTATCGCAAACTAACAGAGTGGTAAGAAATTAAAACACTGACTTAGCATCGGATAATCCCATTTACACTCATTTacataatatttattttaccgTACTGTGTACTGTGAATGAATTCTCGCATGTTTCAGTCGTTTGCACTAGTTTCATAGAAGAACGTTTTCTAAATAAAACCTCGTATGTCTTCTGCATTTTCAGTGTaatgttgttttgtttatttgttgctGTTTTCGCTGAAAGTTGAACCTGAGTGAGTTGGGGTAAGGTTCTATCTAGCGACTTGAAAAATTCAACATTTGTCTATCACGTCTTGTGTAAGCGGCGGTTATACTTTTTTACATGTGTATGTTTAAAGTGAGATTTGACTGTCAAGAATAAAGAAATTGCCTAAGCCTTGCACAAACAATAGATCTGCAAAACGAACATAATTTTTCTCTTTAACCTAGCGAAAGAAATTTCCATGTTATTGTTAGAAGGTGCTTAAGCTAGCCAATCAGCGAGTCGCTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R6R6	Poly(A)-specific ribonuclease PNLDC1 OS=Pongo abelii OX=9601 GN=PNLDC1 PE=2 SV=1
Q8NA58	Poly(A)-specific ribonuclease PNLDC1 OS=Homo sapiens OX=9606 GN=PNLDC1 PE=1 SV=2
B2RXZ1	Poly(A)-specific ribonuclease PNLDC1 OS=Mus musculus OX=10090 GN=Pnldc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001811 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04857 all species →	CAF1	CAF1 family ribonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR006941 all species →	Family	Ribonuclease CAF1	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR051181 all species →	Family	CAF1 family poly(A)-specific ribonucleases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15092 all species →	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004535 all species →	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000012904.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.