Detailed information of ENSOFVP00000012995.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020615616.1, putative exosome complex component rrp40 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006819 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15985
all species →		KH_6KH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026699
all species →		FamilyExosome complex RNA-binding protein 1/RRP40/RRP4Interproscan
IPR004088
all species →		DomainK Homology domain, type 1Interproscan
IPR049469
all species →		DomainExosome complex component RRP40, type I KH domainInterproscan
IPR036612
all species →		Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21321
all species →		PNAS-3 RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177
all species →		Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000178
all species →		Cellular Componentexosome (RNase complex)Interproscan
GO:0000467
all species →		Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0034427
all species →		Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034475
all species →		Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0043928
all species →		Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071034
all species →		Biological ProcessCUT catabolic processInterproscan
GO:0071035
all species →		Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038
all species →		Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071051
all species →		Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSOFVP00000012995.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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