Gene detail

Detailed information of ENSOFVP00000013334.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020623629.1, ornithine decarboxylase-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000014377

GTTCATGTCGAAAAGTCCGTTCGTTTTCACTATTTTTCGTAAAGATTTCAAGATAAAACAGTCATCATTCCGCGTTTAAAAGAGGGAAGAGTTGTCTGCTGCGAGCCTGCGGTTAAGGGCGGCCACACCGCGAAGATCTACTCTAACTGTCCAGAAGCTGACTTCCTGAAAAAGGAAAAGTTCGAATTTACCTTCAACGTGGATTCCGACCCAAGCTAGCGTTTGCTAAGGGTGTATTGGTAATAGAAGTTGTCCTTCCTTTTAAATCATTTTCAAGATGAAGTGTTTAATTGGAGACAGTGTCTCTGTCGACATCCTGAAGGACGACGTGACCTGTGTGGACATAATTGAACAAAAACTTAGCATTGTAGGTCGAGAGGACTCTGATGATGCCTTCTACATTGTAGACTTGGCTGACATTCTTCTTAAACATAAGAAGTGGGTTTCTCTCCTACCAAGAGTTGAGCCCTTTTATGcaatgaAGTGTAACAATGATCCAATAATTCTTAAGATGCTAACAGGGCTAGGAATTGGATTTGATTGTGCAAGCAAGACTGAAATGCAGACAATGCTGGGCATGGGTGTTTCACCCTCAAAAATTGTGTATGCAAATCCGTGCAAACAAGCATCTCATATAAGGTTCTCTGCAAAACATGGAATTTCTTTAATGACTTTTGATAATGAAATGGAATTACACAAGATCAAAGAGTTGTACCCAACTGCCAGGTTACTTCTCCGCATCCGAACTGATGATTCCAAGTCACTCTGCCAGCTAGGAATCAAGTATGGTGCTCCCCTAAAACAATGCCGTCATCTGCTCAAGGTTGCCCATGATCTTAAGTTGAATGTGATTGGAGTGAGCTTTCATGTTGGCAGTGGGTGCTATGATGCAAGTGCTTTTGGAACTGCTGTCTTGGCTGCTCGTAGTGTGTTTGACCTTGGGGCTCAAATAGGATATAACTTTACCTTGTTAGACATTGGTGGTGGTTTTCCTGGAGCACCAGATGCCGCTATAACATTTGAAGAGGTTTGTGGCGTCCTCAACCCATTACTGGAAGAACACTTTCCAGCAAGCTCAGGTATTCGCATCATAGCAGAACCAGGTCGTTACTATTCTGCCTCCGCCTTTACCCTTGTTGTAAATGTTCTTGCCTGCCGTACTGTGAAGGGGAGTCACTTTAAACAGAATGACAAGTCTGTTGAAGCTCCTGGCCATAAGGACTCTGACAAACAGGGTTTCATGTATTATGTCAATGATGGAGTGTATGGTTCATTTAACTGCCTGGTGTTTGATCATGCTACTGTGACTCCAGAAGTTTTTGGTACTGATGACAAAGCTGAGAAATTTCCATCAAGCATTTGGGGTCCAACATGTGATTCCCTTGACTGTATTACCAAGAATGTACTGTTACCAAAGGTTGATGTTGGGGAGTGGTTGTACTTCAGGAACATGGGAGCCTATACATGCTCAGCAGCTTCCACTTTCAATGGGTTTAACAAACCACTGAAGTACTACACTATTGCTCAGAGCTGTTGGTCCATGTTGGAAAAAGTGTTGGGGAAGATTGGCTTGGATGTACATTTGCCATGTCATGTTTCTATGGATCAGAAAAATTCCTTCACTACTTGTCCTGAGTTCTTGGAGATTCTTGCTTCTGCAAAGTGATTTGAATCAGAGCTTGTGTTGTTCAAAATATGCCAGTAATCAGTTGGCTTGATAGTCTTGCTGCACCTTATATATTGTTGACATTTTGGCGCTGTTGCTGTTGCCAAATGCTCAATAAAAGAGATGATATTATTAGAATTTGAAATTACTTTACCAAAGTATAATATtattaagaaaacattttttggtgTACACAGTTTTGAGATGTTATTTTGTCCTGTGACATGATTTTTAAGAGTCAAATGTTGGCCCCAAGTTTGAATAAAACAGATTCTAATGACAGACTTGTATCGTGATCAACATATTACTATATGCAAGATATTGGTGTTAATATCGTTTTTTTGTCAGGAGTAAGATCCGATAATTAATAGAGTGCTAGTTGACATTGATTTGTGTGGCTGCTATTCTCTCTGTGAGGTTGTAATGTATTTTCAGGAGTTATTGCTTCATGGATTTGCCTGGAATCAGTTGCTTTACGCCGGTCTTAAGTGTCAATCTGTATTTGAACTTGACATTTGCTCCAAGAGTATTGAAACATGCTAAAATGTAATATAAATATTTTGCGTGATATTATTTTGGCGTTATGTGCACTGAGCAATTAAACTTGCATTTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09057	Ornithine decarboxylase OS=Rattus norvegicus OX=10116 GN=Odc1 PE=1 SV=1
P27117	Ornithine decarboxylase OS=Bos taurus OX=9913 GN=ODC1 PE=2 SV=1
P11926	Ornithine decarboxylase OS=Homo sapiens OX=9606 GN=ODC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002116 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR002433 all species →	Family	Ornithine decarboxylase	Interproscan
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR000183 all species →	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR022653 all species →	Binding_site	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11482 all species →	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004586 all species →	Molecular Function	ornithine decarboxylase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006596 all species →	Biological Process	polyamine biosynthetic process	Interproscan
GO:0033387 all species →	Biological Process	putrescine biosynthetic process from ornithine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01581	E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase	EC:4.1.1.17	Efferocytosis	ko04148	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.