Gene detail

Detailed information of ENSOFVP00000015482.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020626050.1, endonuclease 8-like 1 isoform X3 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000016669

TCGCCACCGTTTTTAACACTACTGATGTTTGGAGCCGGCTGTCAGCATATCAAGAAAGAAGTTAAAAAGAAGACGAGACGATGGTAAGATAATTGGACCTAATTGGAGATAATCAAAAGAATGGTTGTGGCTTGTCGGAGGCTTGTCGGAGAAAATATCCATGGCCGTAGAGGCCTGTAAACTACTGGAGACGAAACTGGGAACTATTTCTAACGCTTGGCGGTTTTCGTAGATCCCGGGCACAGCCTTACGAGTTATGTAATACTTGTGATTTCTACACTATTTTCGAGAATCTAACAATGCCAGAAGGACCAGAACTATACAAAAACAGCCAATTCGTTAACAGGGTTTGCAAAGGACTCATTTTCAGCGGCAAGATTGTGAAATCAGCTGTCAGCGTCAAGAATCCGGATGTCGAGTTTCCCGCGTGCGATTATTCCATTCACTCTGAATCAAGAGGGAAAGAAATGGCGCTTATTTTAACATCTCTGAACTCGGACAGTAAAGGGAAGCGAATCAAGAAGGAGAATGGCAGTGAAtgtgaagagaaaaaaacaaggATTCTCTTTCGATTTGGAATGTCTGGAAAGTTTACATTTGGCCGGATCAAAGACTTACACAAGCATGCTCATTTGAACTTTTACACAAAGGAGAAGCCAGTGATGGTGCTGAGTTTTGTGGACGTTAGAAGATTTGGTCGATGGGAGTTGACAGATATGTGGTCTAAAGACCGAGCCCCTGATCCAATGTTTGAGTATGAGGAATTCAGATCAAACATTCTTGATAATCTTGGGGACAGGATATTTGACAAACCTCTTTGTGAAGTGATGCATAACCAAAAGTTCTTTAATGGAATAGGAAACTACCTCAGAGCTGAGATAATATTCAGAGCTGGTATTCCTCCTTTTACTTGTGCTCGATCTGtgtttgaaaaactgaaaatcaaACAGGAGGAAGGCATTACCAAGatGTCAAAAGGAAAGAAATGCAAACTTGAACATCCTGACATCCTTGAGCTTTGTAATATTGTCCCCAAAGAAGTGATAAATCTGCCTGGCAAAGGCTATGATCCTGCAGGAAATAACCCTGATTACTCAGCATTCTGTGATTGGCTGCAGTGTTACTACAACCCTGATATGAGAAACATTGTGGATCATGATGGAAGAACTATGTGGTTTAAGGGTGAGGCTGGTCCAATGGTTCCTAAAGAAGCAAAATCTAGAGGTATGCAAAAATctagaaagagaaaacaagaaaaagaaaagaacacagAAGTTAATGGACAGGTGGAAATCAAAATGGAACCTTCTTCTAAGAAAGCTAAAACAAAAGCACAACCAAAAGTGACAAATAAAACAAAAGCAAAATCTGGAAGGGTGCAAAAGTCTAGAAAACGAAAATCagcgaaagaaaagaaagaggtCAATCGATATGTAGAAGTCAAAATGGAACCTTCATCTCCCAGGAAGACTAAAACAAAAGCACAACCCAAAAAGACTATTAAAACAGAAATTAGCAAGAACAAAGTTGTTCAGAAACAAAGCAAAGTCAAAACACCCAAATTGAAGAATGTACCTGTCAGGAGAAGTCTACGTATTAAAAACGAGAGTGACAAGTAGATATGGAATACTTGTAGTTTGTTTAACCACATGTATGTGTAACTTTTAAACTTCTAGAGCAACACAATGTTGTAATTCATAGTCTAAGGCGGATCTAGGGGAATTCGGGTGGTTTCATTGAACATCCTAAATTCTTTGAAATCCTGTATCCATCCTTTTTCTGTGTttgcatagcctcatctaaaagCAAGGGGGATTCGGAGAATTCaagatacatgtagttgtacAGTGGTTTTGCATGATTTtcaagaattctcccagcccccaaGTGTCTAGATGAGGTTATGTTACCACATAAAAATACTCTATTACTTGtatgaaatagtttttaaaagTATATGTGAATCTAAATATCAACCGTGTTTAcgtactctcatctaaacacacctgTCAAGTTGTAAGAACATGTGTAGTATGATAGTATCTCAcctacagttgaacctcccgtaagtgaccacccaaaTTGTCAAGCCTAAGGTGGTCCCTTATGGGAGGTGGTGGCTTACAGGAGCTTAGACAATATAATGGGTCAATATATTTTTTCTCATTGGAATATGGTGACTATGGTAACAACCGAGACCCATGCGCCAGAGGTAAAAGTCAATAATCATTTCGAGAAAAGAAGCTGGTTCTTCCTATTGACAAATTtctgtttcttgtactagcaagggatataatgttacaacaccgtATTAGCCATCTTTCGAAAGTTTGGGCCCTGAGtgggatttgcattagtccattagttgggtgatactaaataCTGATATTCCTTTTTGCATTTACTTGAAATACATTAACAATAGTGTGAATAGTTAGTCCTGTATTTTATCACTCCAAAATATATCAGTATTTCTTGAAAACTCTGTACTGTTTCTTTTATATAGCGTGTGCAATTTTGTTTTGATATCAACAGTTTATTAACGAAACATTGTAttctatttgtttttttactcGAAACTCGATGTAATTGAACATTGTGCAAATAAACTAGGTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96FI4	Endonuclease 8-like 1 OS=Homo sapiens OX=9606 GN=NEIL1 PE=1 SV=3
Q8K4Q6	Endonuclease 8-like 1 OS=Mus musculus OX=10090 GN=Neil1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008759 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09292 all species →	Neil1-DNA_bind	Endonuclease VIII-like 1, DNA bind	Domain	Interproscan
PF01149 all species →	Fapy_DNA_glyco	Formamidopyrimidine-DNA glycosylase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035937 all species →	Homologous_superfamily	MutM-like, N-terminal	Interproscan
IPR015371 all species →	Domain	Endonuclease VIII-like 1, DNA binding	Interproscan
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR012319 all species →	Domain	Formamidopyrimidine-DNA glycosylase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22993 all species →	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0019104 all species →	Molecular Function	DNA N-glycosylase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10567	NEIL1; endonuclease VIII-like 1	EC:3.2.2.- EC:4.2.99.18	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.