Gene detail

Detailed information of ENSOFVP00000016251.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020621803.1, DIS3-like exonuclease 1 [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000017505

ATACGCTGTTAGCGTTCTTTGGGTTATGGATTCCGACTACAATGTTGTCAAGACTTGGTTTGGTAGAACTGTGATTCGGTCCTCCTACAAGCTTTTTTATGAGGCGGCACAAGCCATCGCTGATGGAGTGACCAGTGAGGAAGATCTCATTAAAGACATTCCGGAATTACAGAATGTTGAACGAGAAGCTGCATCAAAAAGGTGCGCTAGAACTAGAAGGTGTAGAGGTGCAAGTCCAACTAGATGATAAAAAAGATATAAAGGATCTAATTCCTAAAAAGCCCTTAGAAATTCATGAAACTGTGGCAGAGTGTATGATATTCGCTAATCATTGGGTTGCTAAGAAGATTGCTGAAGCTTTTCCTAGCGCAGCTCTGTTGCGTCATCACCCATTGCCAAGGAAACAGCACTTCGCAAACCTCATGCATTGTGCAGGCTCTAAAGGATTTTCAATCGACACAAGCTCGAATAAATCGCTGGCAGACTCGCTGGATGAATGTGTTGATCCTCAAGATCCTAACTTTAATAAGCTCATCCGGTCTCTTGCAACTCAAGCTATGTCAAATGCACTCTACTTCTCCACTGGTTCACTATCGCCGGAACATTTCTTCCACTATGGCCTCGCCCTGGACCACTACACGCATTTTACGTCACCGATTAGAAGATACGCTGATGTCATTGTTCACAGACTGTTAATGGCCGCTGTTGAAAATGAAGACATTGACCATCTTTCAAACAACAACGAACTTCAAGAGACTTGCCATCATATTAACATCAAGCACAGGGCTGCCCAAAACGCCCAGAAGGAATCCGTTGTTCTTTTTCAAAGCTTATTTTTTCAAGACCTACCTGAAGATGACGAGAGACGGAACTGTGACGCTGTTATTTTTAATCTCAGAGCAAATGGCGTCCTTGTGTTTGTTCCACGTTACGGTTTGAAAGGCCCAGTATATCTCAAGGACAAAACAGGACAGGTGGTCACTCCTCATATAAAAGAGGATTCAGTTATTTTCGGTCCAGGGTCTCTCTCTCGTCACGAGTATCACATGACGGTCAGGAATGGTGTTGGATCCTTCGACTTTCGACTGTTTGATCATATTCAGGTGCGAATATCTGTCGTCAAGTCACGTGCGCATGCTCAGTCTCTGAGACTGGAACTGCTGTCTTTGGAAACGAGGCAGAGTCCTCCACCGAGTGAGATGCCGTCCCAAGATGACGGTTCACATGCCATGAAAAGAAGTGAGCTTGTAAAGGAGGTGAAGTCAAGTCGTGACGAACAGCAAAAAAGCGTTGGAACGCAAGGCCTTGATGGTGACTTTGTCATACTCAAATCAGAGTTCGGCCAAACCCATGAAAGCGTCAGCCTCTACTCTCTAATGGAGTTCTTCCGAGAAATGGCATTGAGAGATGATGATGGATAAAAAGATGGTCCAGGCCATTACACTAAATCTTAAAAGTTCTGGACATTTTTTTCCGGCAGTTTTCAGGACCTGACATCCTGGCAATCTGTAAATTTAATATCCATTACGGATCTAAAAAAAAGAATGGCTAATGGTAAAAATTGGCCAACTCTGGTGGAAGGAAGTTTCGCGAATGCAACAAAGGATTTCGTGAGAGTTATTAGTGTGCGCATTTAGGGACTGGAAATTATCCTGAAATATAGTGCAAACGCTGAGGGCACTCGACCTCGAATTAAGACAAACGCTTATTGTCTCTTTGACAATTTTAATGTAATATAACATACAATTACAAATGTAGTCAGCACTGTGATGCTAATTAGGAATTCTGTGGGACAATTGTAAATAACGTTTAAGATTCCCAAACAGTCAGAGACAAACGAGTTGGTGTTTGCACTGACATGGGTTAGGAGCAGATGAACCCTTGTTTTCAGAGCCAGCACCGTGACCATTCGATTACGACGGAAATTCTAGATACATTTGGAGCCAAGTACGACATAAATTTCAGAAACCAAGTTGCAATATCGAAATACAAAATATGTAGATGTGCTTTGTCAACTTATCTTCTAGAGGCAGTGATCTTTTAGGAATCATGTAAAACATAATACTTTTCAAAATTATAACGAATCCTCAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U2P0	DIS3-like exonuclease 1 OS=Rattus norvegicus OX=10116 GN=Dis3l PE=2 SV=2
A0JN80	DIS3-like exonuclease 1 OS=Bos taurus OX=9913 GN=DIS3L PE=2 SV=2
Q8C0S1	DIS3-like exonuclease 1 OS=Mus musculus OX=10090 GN=Dis3l PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001458 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF17215 all species →	Rrp44_S1	S1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR033770 all species →	Domain	Exosome complex exonuclease RRP44, S1 domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000177 all species →	Cellular Component	cytoplasmic exosome (RNase complex)	Interproscan
GO:0016075 all species →	Biological Process	rRNA catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000016251.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.