Gene detail

Detailed information of ENSOFVP00000016434.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: RMX46178.1, hypothetical protein pdam_00007820 [Pocillopora damicornis]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000017714

agccattttATGGCTGCAAAGACTCAGAGAGTTCATCATACCATTCACTGGTTTCGTAAAGGCCTCCGATTACATGATAACCAGTCGCTCAGGGAAGCGTGTGAGACGAGTTTAACcctcaaaccagtttatttcaTTGACCCAGACCACGTAAGACATGGAAACATGGGGTTCAATCGTTGGCGATTTCTGATTCAGTCACTCAACGATCTGGACAACAATTTGAAGAGTTTGGGATCTAGATTATTTGTTATTCAAGGGAAGCCTGAGGTAGAGTTGCCGAGATTGTTCAAGGCGTGGAAAATCACAAGATTGACATTTGAGTTTGATCATGAGCCAGATGGAAGAGAACGGGATTCAAAGATTTGTGAACTTGCTTCTGAAGCTGGGATTGAAGTTAAGACTAGAGTTTGTCACTCACTTTACGACTTGGATAAGATTATTGAAAAAAATGGTGGAGCAGCTCCCTTAACATACAAGAAGCTCTGCTCTGTGGTATCGTCAATGGGGCCACCTTTGAAGCCTTTTCCTGCTGTGGATGAACAATTGTTTGAAGGTTGCTCTACTCCAGTTGATGATGAAAATGAGTATAAGTTGCCAACACTAGAGGAGCTTGGAATTGAAATTCCTGAAGAATCAAGCATTGTCCTTTTTCCTGGTGGTGAAACAGAAGCCCTTCGACGTCTAGATGAGCACATGGAGAAAAAGGACTGGGTGTGTAAGTTTGAGAAGCCTAACACATCACCCAACAGCCTTCAACCTAGTACCACTGTTCTGAGTCCATATGTCATGTTTGGCTGCCTCTCAGCAAGACTCTTTTATCACAGATTATCTGAAGTGTACGCACAAGCCAAGAAACACTCCAGTCCTCCTGTTTCCCTTCATGGACAGCTCTTATGGCGGGAATTCTTCTTCACTGCAGCATATGCAACTCCCAACTTCAATAGAATGGAGGGTAACCCTGTCTGTCTGCAAGTCCCATGGGACACCAATCGAGAGTTTGTCGAAGCTTGGTCTGAGGCTCGCACTGGGTATCCCTTCATTGATGCCATCATGACTCAACTGAGGAGGGAAGGATGGATACATCATTTGGCACGTCATGCTGTAGCATGTTTCTTGACCAGAGGAGACTTGTGGATCAGCTGGGAGGAAGGACTGAAGGTGTTTGAGAAGTATCTTCTTGATCATGACTGGAGTTTGAATGCTGGGAACTGGATGTGGTTATCTGCAAGCGCCTTTTTTCATGCTTACTTCAGGGTATACAGTCCTGTGGCATTTGGCAAGAAAACTGATCCTAATGGAGATTATATCAAGAAGTATGTACCAGTTTTAAAGAAATATCCTCCAAAATATATCTACGAGCCTTGGACTGCCCCACAAAGTGTACAAAAAGCAGCAGGGTGTGTTATTGGTAAAGACTATCCTCGTCCAATTGTAGATCACAAAGTGGTTGTGAAGAACAACATTACACGGATGAAAAAAGCGAGAGCAGACCATTATGGTGACAACCCTGACAACAAAAGTAAACGTTCACCAAATAAGAGGAAGAATAACAAACAGTCCCTAGCAACAAACACTAAAATTGTCTTTGATCTGCAGCCTAAAGTTAAGAAGGTTAAGAAGGTGGCACCTGCCCCTTACACTACCTCCAAACCAGTACCAAAGAAGGTTGTCAACCCTCTCATTGAGAAAAGACCAAGGAATTTTGGCATTGGTGGGGATATTCAGCCAAAACGTGACTTGAGCAGATTTGTCAGATGGCCAAAGTACATCAGGCTGCAAAGGCAAAGGAGCGTTCTTTACCAGCGATTAAAGGTTCCTCCTTCCATTAACCAGTTCACACAGACATTGGACAAGCAAACTGCTACCCAGCTTTTCAAGCTGATGCACAAATACCGTCCTGAAACTAAAGCCGAGAAAAAAGCTCGCCTCACAGCCAAGGCTGAAAAGAAAGCGGAGGGCAAGGAGGAACCAGCGGGAAAGAAGCCAGTGATCATCAAATATGGCCTTAACCATGTGACTAGTCTTGTGGAGAACAAGAAGGCACAGCTTGTGGTGATTGCTCATGATGTTGATCCCATTGAGCTTGTTGTGTGGCTGCCAGCTCTGTGTAGGAAAATGGGTGTTCCATACTGTATTGTGAAGGGAAAAGCCAGGTTGGGTAAGGTAGTACACAAAAAGACAGCCACGGTACTGTGCTTCACTGCTGTTCGACCAGAAGACAAGAACAACTTTACTAACCTTTGTGAGGCTGTTAAGACCAACTTCAATGAGAGGTTCGATGAGATCAGAAAGCACTGGGGTGGTGGTGTGATGGGAAACAAGTCCCAGGCGGCTGCACACAAGCTTGAAAAGGCCAAGATTAAGGAAATGAAAAAAATTGCTATGACCAAATTTCTACCCCTTGAATTGTATTTAGAGTTTGATTCTATCTTCTTTTAG

Transcript

ENSOFVT00000017714

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QG61	Cryptochrome-1 OS=Gallus gallus OX=9031 GN=CRY1 PE=2 SV=1
Q16526	Cryptochrome-1 OS=Homo sapiens OX=9606 GN=CRY1 PE=1 SV=1
Q6ZZY0	Cryptochrome-1 OS=Sylvia borin OX=73324 GN=CRY1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007233 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03441 all species →	FAD_binding_7	FAD binding domain of DNA photolyase	Domain	Interproscan
PF01248 all species →	Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain	Interproscan
PF00875 all species →	DNA_photolyase	DNA photolyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006050 all species →	Domain	DNA photolyase, N-terminal	Interproscan
IPR036155 all species →	Homologous_superfamily	Cryptochrome/photolyase, N-terminal domain superfamily	Interproscan
IPR004037 all species →	Conserved_site	Large ribosomal subunit protein eL8-like, conserved site	Interproscan
IPR036134 all species →	Homologous_superfamily	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Interproscan
IPR005101 all species →	Domain	Cryptochrome/DNA photolyase, FAD-binding domain	Interproscan
IPR004038 all species →	Domain	Ribosomal protein eL8/eL30/eS12/Gadd45	Interproscan
IPR002081 all species →	Family	Cryptochrome/DNA photolyase class 1	Interproscan
IPR001921 all species →	Family	Large ribosomal subunit protein eL8	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR018492 all species →	Family	Ribosomal protein eL8/Nhp2 family	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11455 all species →	CRYPTOCHROME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003904 all species →	Molecular Function	deoxyribodipyrimidine photo-lyase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:0043153 all species →	Biological Process	entrainment of circadian clock by photoperiod	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02295	CRY; cryptochrome	-	Circadian rhythm	ko04710	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.