Gene detail

Detailed information of ENSOFVP00000016792.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020628904.1, leucine-rich repeats and immunoglobulin-like domains protein 1 [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000018130

ATGAAGTCATTAGCGATCTTGTTTGTCTTCATACTTTTTTGCGCCGTGAGCTGGAGTCAGATCACCACTCCTTGTCCAAAGGAATGCGTCTGCGAGGAACAATATTTCTCTGAATCACAAGGCGTCGGAGCGAAAGTAAACTGCTCCGGAAAAAAGCTGAAGCGATTCCCCTGGCCTCTTCCACAAGTAACTACAACATTGTTACTTCAGAATAACAAGATATCCAGGCTGGAAGGATGGCATTTCAGGGGGATGATATATTTGATGGTTTTGCATCTCGAGGGAAACCGAATAAAAAAGATTGGAGAAACCTCCTTGGGATATCTCCCTTCTCTCCATACATTGTATTTACAGAACAACCGCATTGAAGAGATGGCTTTTAGGGCATTCAGGAATTGTACAAGGCTCAAAACTTTGAACCTTGCAAAGAACAAGCTCAAAAGCCTTCAGTATGCCGCATTTGATGGTCTGGATCAACTGGACAAATTGGACCTCAGCGGGAACTCGATCAGCACAATAGAAGACGGTGCATTCCTTGGTCTCTATCGTCTGAAGACCTTATTACTGAATTTTAATCAGATTACAAAGATTGGAGCGTACCTGTTTGCAGATGTCTACTCCCTTACTACTCTATACCTTTACCGAAATCAAATTTCGGTTATTGAGAATGGAGCATTTTCTCGATTGCTGCAACTTAGGATTCTGTCACTCTTTGATAACAAGATTCCCTCCATTCCTCAGTCGACTATCAAAGGACTTGAAAACCTCGAAGAACTGTATCTTCATCGAAACAGAATTAATAAAATTGAACCTTGGAGTTTCTCAGCTACCAGGAAATTACAGCAATTGTATTTGTATTCCAACCTACTGACGTTTATTCCTGATAACATCTTTGAGGATCTCAGAGCCCTCCGTGTCCTCCATCTCGGTATAAACATGATCACCTACATCGCGGATGGTGCTTTCCGACATCTTGGAAACCTTAACGTGTTATATCTTGATTCAAATCGCCTCACCCTTCTTACCCCAAGGACTTTCGAAGGACTCTCGAACGTCAAAGATTTACATCTTTACTTCAACAAAATTTCATATATTGGAAAAGGAGGATTCGATCATCTAAAGAAAATATCAAGACTCTTATGGGATGTCCCAGAAGCCTATCGCCAGACTCTGCCACCAAGTGCAGCTTTAACGCGAGGGAGTGGGCTCCACTGTGACTGTAACGTGCGCTGGTTAAAGGACTGGTTACTAGAGAGAGGTCTGAACGAAATAACATGTGCCACTCCCATCAGGTTTGCCGGTGTCATGGTAACgcaactgaaggaaaaaaacttCGTTTGTGAGCCTCTTAAAGTATCAGTATATCCCAAGAAACTAATGGCGCTTTTTGGGGAAAACGTCCAAATCCAATGCAGAACGAATGTGGGTGCTACGTATCACTGGATAGTGAATGGCACTAGATTGGAAGCGGACCAATATCGAGTCCCCACCCCACTGGGACAATTAACCATCTACGGTTTGGCCGAGGAGGACCTAGGAGAGTATGTTTGTATTGCTCAGAATGAGGCTGGAATTGGAGCTAGTCACGCGATGGTTACTGTTGGAGCTCGTCCCCAGTTCACGACCTATCCCTCGCCTGTTGACGCAAGAGAGCCACAAAAGCCAGTGGTATTCAAATGTCGAGCCAAGGGATCACCGACGCCCCAAATCAAGTGGTTCAAGGACGGGTTGTTAATACTGGGCACTCCTGAGGAGTCACGCTTCCACATCACCATAGAAGGTGCCCTAGTGTTCATGGGCAAGAGGTTTCATGTCACAAGGGAGGGGTCCCTAATAATTTTTGACCCTCGGGTGGAGGACGAAGGAACTTACAAGTGTATGGCCGAGAATGAGCTTGGAAAAGTTTCATATGACGTCAGTCTTTACGTCGAAATGAATGCTAAATGTGTACGTGGTTGTAGAGGTGGTGGTGTTTGTACTGCAGTGAAGTACGACTGTATCTGTACAGTAGGCTTTCACAAAGAGGGAAGTCAATGTGTAAAAGATAAAAAGATCAAGGCTACGCTGACTGAAGAAACGGGCTCCGGATCAGCTTCGGGACCTGATTATGGATCAGGCTCGGGTGCGGGATCAGGCTCGGGAAGCGAGCTTCCCACAAAACCAACCACTCCCAAAACCACTGGACCGGGAGTCGACGAGGAGTCTGGGAGTGGTAGCGCGGGAGGAAGTCCCGCCACTAACGGACCCGGGGTAGATGAAGAGGTGTCTGGTGACGAAACATCAGCGGAAAAGACTGGAAGCGGAAGTGACCGTGGATATGCAGAGGGAGAAAGTGACGATGGTAGTTTCGAGACGTTGGATCCAGTGAAAAGGAAATCACGATCGGCAGAAGCACCGCCCATAAATCCATTGGAGGCTCCTCCGTCCTGA

Transcript

ENSOFVT00000018130

ATTGAAGTACAGCCAACTTCCACCAGGACAACTTCTCATCGATCTTTGATTAGCACATTGCCACAAACCGGAGCATTCATCTTGATTGCAATGAAGTCATTAGCGATCTTGTTTGTCTTCATACTTTTTTGCGCCGTGAGCTGGAGTCAGATCACCACTCCTTGTCCAAAGGAATGCGTCTGCGAGGAACAATATTTCTCTGAATCACAAGGCGTCGGAGCGAAAGTAAACTGCTCCGGAAAAAAGCTGAAGCGATTCCCCTGGCCTCTTCCACAAGTAACTACAACATTGTTACTTCAGAATAACAAGATATCCAGGCTGGAAGGATGGCATTTCAGGGGGATGATATATTTGATGGTTTTGCATCTCGAGGGAAACCGAATAAAAAAGATTGGAGAAACCTCCTTGGGATATCTCCCTTCTCTCCATACATTGTATTTACAGAACAACCGCATTGAAGAGATGGCTTTTAGGGCATTCAGGAATTGTACAAGGCTCAAAACTTTGAACCTTGCAAAGAACAAGCTCAAAAGCCTTCAGTATGCCGCATTTGATGGTCTGGATCAACTGGACAAATTGGACCTCAGCGGGAACTCGATCAGCACAATAGAAGACGGTGCATTCCTTGGTCTCTATCGTCTGAAGACCTTATTACTGAATTTTAATCAGATTACAAAGATTGGAGCGTACCTGTTTGCAGATGTCTACTCCCTTACTACTCTATACCTTTACCGAAATCAAATTTCGGTTATTGAGAATGGAGCATTTTCTCGATTGCTGCAACTTAGGATTCTGTCACTCTTTGATAACAAGATTCCCTCCATTCCTCAGTCGACTATCAAAGGACTTGAAAACCTCGAAGAACTGTATCTTCATCGAAACAGAATTAATAAAATTGAACCTTGGAGTTTCTCAGCTACCAGGAAATTACAGCAATTGTATTTGTATTCCAACCTACTGACGTTTATTCCTGATAACATCTTTGAGGATCTCAGAGCCCTCCGTGTCCTCCATCTCGGTATAAACATGATCACCTACATCGCGGATGGTGCTTTCCGACATCTTGGAAACCTTAACGTGTTATATCTTGATTCAAATCGCCTCACCCTTCTTACCCCAAGGACTTTCGAAGGACTCTCGAACGTCAAAGATTTACATCTTTACTTCAACAAAATTTCATATATTGGAAAAGGAGGATTCGATCATCTAAAGAAAATATCAAGACTCTTATGGGATGTCCCAGAAGCCTATCGCCAGACTCTGCCACCAAGTGCAGCTTTAACGCGAGGGAGTGGGCTCCACTGTGACTGTAACGTGCGCTGGTTAAAGGACTGGTTACTAGAGAGAGGTCTGAACGAAATAACATGTGCCACTCCCATCAGGTTTGCCGGTGTCATGGTAACgcaactgaaggaaaaaaacttCGTTTGTGAGCCTCTTAAAGTATCAGTATATCCCAAGAAACTAATGGCGCTTTTTGGGGAAAACGTCCAAATCCAATGCAGAACGAATGTGGGTGCTACGTATCACTGGATAGTGAATGGCACTAGATTGGAAGCGGACCAATATCGAGTCCCCACCCCACTGGGACAATTAACCATCTACGGTTTGGCCGAGGAGGACCTAGGAGAGTATGTTTGTATTGCTCAGAATGAGGCTGGAATTGGAGCTAGTCACGCGATGGTTACTGTTGGAGCTCGTCCCCAGTTCACGACCTATCCCTCGCCTGTTGACGCAAGAGAGCCACAAAAGCCAGTGGTATTCAAATGTCGAGCCAAGGGATCACCGACGCCCCAAATCAAGTGGTTCAAGGACGGGTTGTTAATACTGGGCACTCCTGAGGAGTCACGCTTCCACATCACCATAGAAGGTGCCCTAGTGTTCATGGGCAAGAGGTTTCATGTCACAAGGGAGGGGTCCCTAATAATTTTTGACCCTCGGGTGGAGGACGAAGGAACTTACAAGTGTATGGCCGAGAATGAGCTTGGAAAAGTTTCATATGACGTCAGTCTTTACGTCGAAATGAATGCTAAATGTGTACGTGGTTGTAGAGGTGGTGGTGTTTGTACTGCAGTGAAGTACGACTGTATCTGTACAGTAGGCTTTCACAAAGAGGGAAGTCAATGTGTAAAAGATAAAAAGATCAAGGCTACGCTGACTGAAGAAACGGGCTCCGGATCAGCTTCGGGACCTGATTATGGATCAGGCTCGGGTGCGGGATCAGGCTCGGGAAGCGAGCTTCCCACAAAACCAACCACTCCCAAAACCACTGGACCGGGAGTCGACGAGGAGTCTGGGAGTGGTAGCGCGGGAGGAAGTCCCGCCACTAACGGACCCGGGGTAGATGAAGAGGTGTCTGGTGACGAAACATCAGCGGAAAAGACTGGAAGCGGAAGTGACCGTGGATATGCAGAGGGAGAAAGTGACGATGGTAGTTTCGAGACGTTGGATCCAGTGAAAAGGAAATCACGATCGGCAGAAGCACCGCCCATAAATCCATTGGAGGCTCCTCCGTCCTGAAAACGGTGTCAACGATTTTGGGCGAGTTCTATGAAACTTCGCAAACATGCTGTTGGATCATCTTTGCGAAAAAGCGTTATTTCTCAAAGTTCTTAACCTTTTTTCCCGACATTAGTCAGGAGATGTTCAGATGATGttaaaaacgaaaacgaaaacagaaCACACCCAAAAAACTAGGATTCAAAATTTTAATATGCTGTGTATTTCGCTTTACTGGCAAGTGTCCCTGTGGCCTCAACCTTACCAGTCTCGCTAATTTCTCTTGTTCATGTTTGTGGATAAGAGTTCCGTTCAAGTTAGCGGACACTAGGTCACGTTAGTGCCTCGACTTGGTGGTTGTCTACTTTATAACTTGAAAAGTATCAAAGGGTGACAATGTACATTGTACcatttgttgttgtgttttaatacatgtaaaacaCCAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1C6	Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Mus musculus OX=10090 GN=Lrig3 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q9I7U4	Titin OS=Drosophila melanogaster OX=7227 GN=sls PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006554 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01462 all species →	LRRNT	Leucine rich repeat N-terminal domain	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000372 all species →	Domain	Leucine-rich repeat N-terminal domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24366 all species →	IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000016792.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.