Detailed information of ENSOFVP00000017024.1 in Cyphastrea salae

Genomic Location: chr2:14475664...14477371
NR annotation: XP_020621138.1, transcription factor LBX1-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q804R0Transcription factor LBX2 OS=Danio rerio OX=7955 GN=lbx2 PE=1 SV=1
P52954Transcription factor LBX1 OS=Homo sapiens OX=9606 GN=LBX1 PE=1 SV=2
P52955Transcription factor LBX1 OS=Mus musculus OX=10090 GN=Lbx1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0011749 (this species only) · gene tree & orthology
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR051000
all species →		FamilyHomeobox DNA-bindingInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24324
all species →		HOMEOBOX PROTEIN HHEXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSOFVP00000017024.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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