Gene detail

Detailed information of ENSOFVP00000017200.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020621799.1, LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000018608

GAGCGATGTCATCTGGGAAGAGCAGAAGAAGAAAGGACGATGGAAGACTCTCAAGGTGCGGCTCTGTGATGAATTAGAAGCTGGTTGGACTGAAATACAAAGTAGTCTGTCTGTGGGAGAAACTCCGAGTTATATCTACAAGTCTGGTGACCTGGAGGTTGATTTTCAATTGATGGAAATTATGCGGCCCACACGTCAGACCATTAGAAGAACTTTTAGACCAGGAGTGTCTCTAGAGTACCTTGCGTCACCAAACGAAATGAGTTTCTTTGCCAAAATTAACTCGGTTCAGATTGACAGTCAGGTCCCGGACGCTACCTTTCAGACTGTTCTCTTCCCAGTTCCCCCTCCAAAGTCTCTCGCTGCAGAAAACGCACCAAAGCCGTACATTGAACTGAGCTTAGACATGAAGCAAGAGGAACACACACATGTGAATGAAATCAAATATTTTAAGGTTCTTATTCAAGAGATGGATGTGAAAGTTGACATGGGATTCCTTATGGCTCTACTTGGTCTCTTCTCTTCTGACGCCATTGACAGAAGCCAAGAGGCTACCCAGTATTCCTTGGATAAACAACGCGTCCATCACAAGCTAGGCGAGGCGTTTGCTGTTCAGGCTGCCTTGAGTACTACAAGAAATTTCTTTGACTACTTTCATCTGTCGCCGCTAAAGATTCATTTGAGTTTCTCTCAGCTGGGTGGTGGCGCGGGCGGTGATAAATCACAGACTCATATCGGCGGCAGTTTTCTGAACCTGTTATTGCAAAGTGTTGGAGTAGCAGTCACTGAAGTACAGGACGTAGAATTCAAGCTTGCATATTTTGAAATTGTGGACAAAGTGTACACTCAACAGCAGTTGATGGACGTCGCTGTCGACCATTACTCCCGTCAGGCTTTGAAGCAGATGTACGTGTTGGTGTTAGGCCTTGATGTGTTGGGAAATCCATTTGGTTTGTTAACTGGCTTGAAGGAAGGTGCAGTAGACTTCTTTTACGAACCCTACCAGGGCCTTATACAGGGACCTGGTGAGTTTGCAGAGGGTTTGGCGATTGGCGCTAGGAGTCTGTTTGGACACACAGTTGGTGGTGCGGCTGGCGCAGTCTCGCGTATAACTGGCACGCTAGGCAAAGGTATCGCGGCTCTCACAATGGACGAGAAACACAAACAGGAGAGGAGACAGGCCATGGGAAAGAAACCAGTCAATGTCAAAGAAGGACTCACCAGGGGTGGGAAAGGATTGTTTGAGGGCGTTGTTGGAGGTGTGACAGGGATAGTGACCAAGCCAATGGAAGGAGCTAAAGAGGCCGGGGCTGCTGGATTTTTCAAGGGACTGGGTAAGGGTGTGGTTGGTGTGTTAGCAAGGCCTGCCGGGGGACTGGTTGACTTTGCAAGCAGCACGTTGGAAGGAATCAAAGGatctGCTAGTACGGGCAGTGAAGTGCGACGCTTGAGACCCCCAAGATGTTTCTACGGTGATAAGGTGATAAAACCCTACAATTCGGTTGAGGCCAAAGGGAACGCCATTCTCCAGGAAATCAAGAAGACAAAAGCTGCGCTGCTGGATGATACGTATTTCTGTCACTGTCATCTTAACATCAAGAAAGCGCTGATTATCACCAACAAACACATCATAGTTGCTGGTAAAACAGAAGTGTTTGAGACTTGGCAGTGTGACTGGATGTGTGAATTTAGAGAGCTTCAAGAGGAGCCGACAACTGATGGGCAAAAACTCGTTCTTAAAGTCCCGGACAAAGCCAAAGGTAAAGGCATTTTCAAGAAGTCTTCAGCCGTTAGATCCATACAGACCCCAAGTTCAGAGGTCGCTCAGtggctGGTGGGAAAAATACGGGAAGCTCGTTCATAGATCAAATCTCACTCGTTGCAAGGGGAATTCGACGCATGCTTGCTTCAAGAGAGACATGAATAACCAGTGTGCTCTTTCGATAaaacttgaaaagaaaaaaagactgcGAACGGGTGGTCATTAAATCCTTAAATTCCAGAATAAATCAAAATGGCATTTCTCCTTACTGTGTCAATATCATGGTCAAGCAGATAATTGATGAGAATACAGATAATTATTAACTTGGAATAATCTTGACGTGTCTCCGAATTCTTACAGACAACGGTAAACGAAATATATAGTAACAGAGACTagagagaattgttcttttgagTGTATAATTAAACTTTGGATTTACTAATGACCACTCTACTCGAAGTATTTACATAGGCTGAGAGGGAAAGTTATTTGGTTTTGTGTTTGAGGAGCCATAACTTTATTGTAGTCGTTCCAAGTTCATTTCTGTGTCTAGAAAGAAAACTTAGGATCACTATAAACGCTAGAAAAACCATGGTTCGGGCCGTCCAACGTGAAGACTGATCGGCGGTTATTTTCTTATCGCATAGCCGATACAGGTATCGAGAAATAACGGTATGGTCACGTTTTGTAAACACGTTCTCGCAACTGGGTAATATTATAAGAAAAAGACGTAGTCCAGTCACTGTCCAGTAAGAAGATTTTGGAGTCCTTATTTACAGCAGCGGGGAAATAACCGGGGTAAAGATGTTTTTGGGTGGTCTATAATTTCCAATCGCAAATTGGGATCCAATTAGGATTCATTTAGAATTCGTTTGTGAAGCTTAAGTtgataataaaacaattgaagCAATATTTCAGTTAGGTACTGCGTAAAAATGGTGTGAAATAAAATAAGTATTTAATTTAGGTTAGCATATGCTTACTTATAGACTTTTGCATCCTTTTATCTTTTGAACGAGTCTGACGGGCAGCTAATCTCGTTTCGAACGGAAACGAACGccgtgtgttttttttttcgggagaCAAAGGGACTGTAGACAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q709C8	Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1
Q96RL7	Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2
Q5H8C4	Intermembrane lipid transfer protein VPS13A OS=Mus musculus OX=10090 GN=Vps13a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21679 all species →	VPS13_C	Intermembrane lipid transfer protein VPS13, C-terminal	Domain	Interproscan
PF16909 all species →	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan
PF09333 all species →	ATG2-VPS13_C	ATG2/VPS13, C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049424 all species →	Domain	Intermembrane lipid transfer protein VPS13, C-terminal	Interproscan
IPR031645 all species →	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan
IPR015412 all species →	Domain	Atg2/VPS13, C-terminal	Interproscan
IPR026847 all species →	Family	Vacuolar protein sorting-associated protein 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053 all species →	Biological Process	protein retention in Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000017200.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.