Gene detail

Detailed information of ENSOFVP00000017445.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020627692.1, roquin-1-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000018901

ATGCAAGAAGAAGCTTTGAAACTGATTTTGTTGGCTCTTGAGGGAGGAGAGGCTTTGTCTAGGAAAGTTTTAGTTCTATTTGTGGTTCAGAAGCTGGAATCTCAGTTTCCACAAGCTTCCAAAACAAGCATTGGTCATGTGGTACAGTTGCTTTACAGAGCATCCTGTTTTAAGGTTGAAAAAAAGAACAATGAATCATCTCTAATGCAGCTAAAGGAACAGTACCGTACCTATGATGCTTTGCGGAAGGAACATGATGCACAAATAGTTCAAATTGCTACAGAGGCAGGACTGCGCATTCTCCCAGACCAGTGGTCCTCTCTGTTGTATGGCGACCTGGATCACAAGTCTCACATGCAGTCTATCATTGACAAGctCCAATCTCCTGCCTCATTTTCTCAGAGTATTCAGGAATTAATCATCGCTCTTCAGAGATCTGGGGATCCTGGAAATCTCTGCCAGATGCGAGACCAGTTTGAATCACTTTCCCAGATTGATGCCTCTCCAGAGGCAACATGTCcagagtggaaagaattagaaCAAGCTATGACTTCAGTACACTCCGTGGTCAATGGACTTGTCGACTTCTCAAAAGCATATGGTAAAGGGATGAGAGGCTCCAGTGATCCACCACAGactcacaacaacaacaaatttaaaACCAGCATGTGTCGGGATCACACCAGAGGAGGATGTCCCAGAGGAATGCACTGTACATTTGCACATTCAGAGGAGGAGCTGGAGAAGTTTAGTAAACGAAGAACTACAAGGCCTCGGCCCACAGCTATTCCAAGAGGATCAGGTCCAGGCGCTGGTCCTGATCAGTACTCACCTCTTGAAAATGGATCTGACTCCAGTCCTACTGCTACCCAAGCTTCTACAAATGGTATCAATGGCTCTGCACGATCTTCCCCACACTATATTTCATCTGGTGATATGCCACAACCCACTCCTTGCTATGGAGCTCCAAGCCAGATTAATCGTCGAGATAGTCAGGAGCAAATTATAACACAGAGGATGAAGCAGATGACTGTGTACTCAAACGATGGTTACTGTGGACCTCGCTCACCTTATGATCATGTGCAGTCACCCTATGTGTCTTCAGGAAGTGATAGTAGAGGGTATGTTTCGTATTATGGTCCACCAGCGCCACCTGGAAATTCATATTCCAATGTTGTGTCAAGAGGAAAGGACGTTGCTGTCGGTGTTATGACTCCACCCCGGAACTCACCCTTGACTGTTCCCGATGAAGGGTTAAATGGCATGACAAATGGCCATACTGACCACCACCCAGGACGCATTGACCATCCATCCATGTACAGCGGAAGAGCACGACAGCGAATGCCTCAACAGCCTTGCGGTTATCAGGCCTATGACCATTCATTTGGCTATCCTTCAGACCCTACACCTTACCATTACAGCCAACAAGCACCAGAATTCTACAGTTCGCATTTTCCTGGAAGACCATTATCTTATGACCACATTCACCAGGGTGCCATCGGGTATCCATCGTACCCTGGACGCAGTGATTATTACCCATATTCACGACCATTGTTTGAAACTCCTGACATGGCTGGAAGAGGGATTTTACTGCCTCGGGGAAGAAGCCCATTTATTCCTGCTGAGCTACATGATGAAAAGAATCCTGATTCATCATCTCCACGGAGTAGTGACACAGCTACTGACTGCGACCTCCTAGAGTTGTGGATCCCCAGGAAGGACACTGACAGTGGTGTCAGCAGTGGTTCTCCACTCAGCCACTCTCCTGCAGCCAGCCAATCATCAAACTCTAGTTTGTCGCCTAGGCAACAGTCTCCTGTGGGGTGGCAACATAGCGGCGAGGCTGATTACATCTGGAGAAACTTTCCTGAAGACAGCAATGCTTTGCCACCTCCTCCCACCATCACCGACACAGCACCAATATGGAGTCCACACCATGGCAGTGAGGTTCGCAAACTTTGGCAACCGTTTATTGACATAGAAGAATGGTCAAGGAAAGAGGACCAGATCAAGAAAGATGAACAGTACGCTCGGGTCCTTCAGGAGCAGATGGATCAAAATAGCTCCACTACAACTCCAGAAACCCGGGGCATCGATCTGTCGACCCAGACCCTTGTCGGCGGAGATCAGCCGGGCAGTGAGCAGGTCAGGAGGGGACAGGACGCATCCGATTGCAGCCTGACCATTGATAGCATGGAGAACGAAGCTGAAGTAAAAAGAAGGAAACACGAAGAACACATGAGGTTGCTTCAGGAGCGTAGACAACTTCTACAAAAACAGGAGCGCGAGCAGCAGGAGAGACAGGACCGGAAACTCGCGCAGGAACTGGCCTTCAGAGATGTACAGAAGGCGGGGAGACTTCCGGATCCGCGGTGTATCATGAAGCCCTTTAATCCTAACGTGATCTCCCGTGGGGCCCCCGTGGGGCTTGGCTTTAGCGGAAAGGGAAATGATATCCCTTTGGAGCGCGATGCATTCAGTGGGTTAAACAGCTACCGCGGCTCCTGTGCGTCCTCATTGGCTAACGATGATGTCATGGATACGTCAAAAATGACGTCAGGCTGTAGCGGCGACATCCGCGTACAAGagtga

Transcript

ENSOFVT00000018901

GCTGCTAGAAGCCTTGGAGAACGGACCGTAACAGAGCTCATTTTATTACATCAAAATCAGCAACAGCTGTCTGCAAATCTCTGGGCTGCTGTGCGGAATCGTGGTTGTCAGTTTTTAGGACCAGCAATGCAAGAAGAAGCTTTGAAACTGATTTTGTTGGCTCTTGAGGGAGGAGAGGCTTTGTCTAGGAAAGTTTTAGTTCTATTTGTGGTTCAGAAGCTGGAATCTCAGTTTCCACAAGCTTCCAAAACAAGCATTGGTCATGTGGTACAGTTGCTTTACAGAGCATCCTGTTTTAAGGTTGAAAAAAAGAACAATGAATCATCTCTAATGCAGCTAAAGGAACAGTACCGTACCTATGATGCTTTGCGGAAGGAACATGATGCACAAATAGTTCAAATTGCTACAGAGGCAGGACTGCGCATTCTCCCAGACCAGTGGTCCTCTCTGTTGTATGGCGACCTGGATCACAAGTCTCACATGCAGTCTATCATTGACAAGctCCAATCTCCTGCCTCATTTTCTCAGAGTATTCAGGAATTAATCATCGCTCTTCAGAGATCTGGGGATCCTGGAAATCTCTGCCAGATGCGAGACCAGTTTGAATCACTTTCCCAGATTGATGCCTCTCCAGAGGCAACATGTCcagagtggaaagaattagaaCAAGCTATGACTTCAGTACACTCCGTGGTCAATGGACTTGTCGACTTCTCAAAAGCATATGGTAAAGGGATGAGAGGCTCCAGTGATCCACCACAGactcacaacaacaacaaatttaaaACCAGCATGTGTCGGGATCACACCAGAGGAGGATGTCCCAGAGGAATGCACTGTACATTTGCACATTCAGAGGAGGAGCTGGAGAAGTTTAGTAAACGAAGAACTACAAGGCCTCGGCCCACAGCTATTCCAAGAGGATCAGGTCCAGGCGCTGGTCCTGATCAGTACTCACCTCTTGAAAATGGATCTGACTCCAGTCCTACTGCTACCCAAGCTTCTACAAATGGTATCAATGGCTCTGCACGATCTTCCCCACACTATATTTCATCTGGTGATATGCCACAACCCACTCCTTGCTATGGAGCTCCAAGCCAGATTAATCGTCGAGATAGTCAGGAGCAAATTATAACACAGAGGATGAAGCAGATGACTGTGTACTCAAACGATGGTTACTGTGGACCTCGCTCACCTTATGATCATGTGCAGTCACCCTATGTGTCTTCAGGAAGTGATAGTAGAGGGTATGTTTCGTATTATGGTCCACCAGCGCCACCTGGAAATTCATATTCCAATGTTGTGTCAAGAGGAAAGGACGTTGCTGTCGGTGTTATGACTCCACCCCGGAACTCACCCTTGACTGTTCCCGATGAAGGGTTAAATGGCATGACAAATGGCCATACTGACCACCACCCAGGACGCATTGACCATCCATCCATGTACAGCGGAAGAGCACGACAGCGAATGCCTCAACAGCCTTGCGGTTATCAGGCCTATGACCATTCATTTGGCTATCCTTCAGACCCTACACCTTACCATTACAGCCAACAAGCACCAGAATTCTACAGTTCGCATTTTCCTGGAAGACCATTATCTTATGACCACATTCACCAGGGTGCCATCGGGTATCCATCGTACCCTGGACGCAGTGATTATTACCCATATTCACGACCATTGTTTGAAACTCCTGACATGGCTGGAAGAGGGATTTTACTGCCTCGGGGAAGAAGCCCATTTATTCCTGCTGAGCTACATGATGAAAAGAATCCTGATTCATCATCTCCACGGAGTAGTGACACAGCTACTGACTGCGACCTCCTAGAGTTGTGGATCCCCAGGAAGGACACTGACAGTGGTGTCAGCAGTGGTTCTCCACTCAGCCACTCTCCTGCAGCCAGCCAATCATCAAACTCTAGTTTGTCGCCTAGGCAACAGTCTCCTGTGGGGTGGCAACATAGCGGCGAGGCTGATTACATCTGGAGAAACTTTCCTGAAGACAGCAATGCTTTGCCACCTCCTCCCACCATCACCGACACAGCACCAATATGGAGTCCACACCATGGCAGTGAGGTTCGCAAACTTTGGCAACCGTTTATTGACATAGAAGAATGGTCAAGGAAAGAGGACCAGATCAAGAAAGATGAACAGTACGCTCGGGTCCTTCAGGAGCAGATGGATCAAAATAGCTCCACTACAACTCCAGAAACCCGGGGCATCGATCTGTCGACCCAGACCCTTGTCGGCGGAGATCAGCCGGGCAGTGAGCAGGTCAGGAGGGGACAGGACGCATCCGATTGCAGCCTGACCATTGATAGCATGGAGAACGAAGCTGAAGTAAAAAGAAGGAAACACGAAGAACACATGAGGTTGCTTCAGGAGCGTAGACAACTTCTACAAAAACAGGAGCGCGAGCAGCAGGAGAGACAGGACCGGAAACTCGCGCAGGAACTGGCCTTCAGAGATGTACAGAAGGCGGGGAGACTTCCGGATCCGCGGTGTATCATGAAGCCCTTTAATCCTAACGTGATCTCCCGTGGGGCCCCCGTGGGGCTTGGCTTTAGCGGAAAGGGAAATGATATCCCTTTGGAGCGCGATGCATTCAGTGGGTTAAACAGCTACCGCGGCTCCTGTGCGTCCTCATTGGCTAACGATGATGTCATGGATACGTCAAAAATGACGTCAGGCTGTAGCGGCGACATCCGCGTACAAGagtgaagcaaaaaaaaaaaaatcatttgctCAATTAGGAATCTTCTATGTACAGATTGTAAGCCTATGTAATTACTTGTAAGAGTGCGTGTGTTACATTCGTGTTATTCCTTCGTTAGACTATAGATCATTCAACGAATCAAATCGACTGAAAGTGGTTAAACTTTTCTTATACTATGTGTTTAATGGAGTGTTCTTTTTGCAATATGTTTGATTATGCCCCAGTTTAACTggacttgtttgtttgtttctaatCATGTTATAAAATCAAAGCACTTTTAAAGTGTCGGTCAGTGGTTTAGGTTTTCATTGAAAAGTTTTCCCAAAGTGTGCAGGGCACTAGCTGTTTAAGGCTCTAGTGCAGGTCAGCTAGACGAGCGGGCATATAAGTGCGGTGTTGGTTTCAGAGGCGTTGGATGTCAAAGACTTTTTGTTGACTTTTCAAGTGATAACTTTGTTAAGAACTCAGTCACGACTCAATGTGAAACGATATTTACGAACGAGAAGAAAAAGGACTGCTATTTGACTCGTGATTGATAAAAATTTGGATCGATTTATAGCAATTTATCAAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4VGL6	Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Q5TC82	Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1
Q6NUC6	Roquin-1 OS=Xenopus laevis OX=8355 GN=rc3h1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003558 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18386 all species →	ROQ_II	Roquin II domain	Domain	Interproscan
PF21206 all species →	Roquin_1_2-like_ROQ	Roquin 1/2-like, ROQ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR041523 all species →	Domain	Roquin II	Interproscan
IPR052249 all species →	Family	Roquin domain-containing protein	Interproscan
IPR048575 all species →	Domain	Roquin 1/2-like, ROQ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13139 all species →	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0000288 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0035613 all species →	Molecular Function	RNA stem-loop binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000017445.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.