Gene detail

Detailed information of ENSOFVP00000017867.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020626916.1, valine--tRNA ligase-like isoform X1 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000019360

ggGCTTGAAAAGATTTAATGCTAGGAAGGTTATACTTGATGCTCTAACTGCCAAAGGTCTGTTTATCAAGACAGACGACAATCAGATGGTAGTTCCTGTCTGTAGTCGCTCCAAGGACATTGTTGAACCCCTTATCAAGCCTCAGTGGTATGTTGACTGTCAGGAAATGGCAGACAAGGCTGTGAAGGCAGTTAGAAATGGAGACCTTAAGATCATTCCAAGCATGCATGAAAAGGTGTGGTACAACTGGCTCGAGAATTGTAGGGACTGGTGCATCTCCCGACAACTTTGGTGGGGCCATCGTATCCCAGCATACTTTGTGACTGTTGATGATCCATCTGTTCCGCCAGGGGAGGATACGGATGGTAAATACTGGGTCAGCGGTCGGACAGAAGAGGAAGTGCTAAAGAAGGCAGCAGAAAGGTTCAATGTAGCCCCTGAAAAGATCACTCTGAAACAAGACGAAGACGTATTAGATACGTGGTTCTCCTCCGGCCTGTTTCCTTTCTCCATATTTGGTTGGCCAGAAGAGACTGATGATTATAAAGTATTTTATCCTGGAACGCTCTTAGAAACTGGACACGACATTCTGTTCTTCTGGATTGCCAGGATGGTGAAGCTTGGCCTCAAGCTCACTGGTCAGCTGCCATTCACTGAAGTGTTTCTCCACGCAATGGTGCGAGATGCGCATGGCAGAAAAATGAGCAAGTCTCTGGGGAATGTTATTGACCCCGTCGACGTCATTAATGGAGTATCATTAGAAGAACTTCACCTTCAGCTTGACAACAGTAGCAACCTGGATCCAAGAGAAGTAGAACGAGCTAAGAAAGGACAGAAAGAAGATTATCCTGAAGGGATTCCCGAATGTGGTACTGACGCTTTGCGGTTTGCTCTCTGTGCTTATACTGCGCAAGGACGTGACATCAATCTTGACGTACTCCGTGTGCAGGGATATCGTCATTTCTGCAACAAGTTGTGGAACGCCACAAAGTTTGCACTTGGCGGTCTTGGATCTGACTTTAAACCGAACGTCAAACCAGAGCTAATAGGTAACGAGACTCCAGAAGACCGTTGGATTTTGAGCCGGTTATCCTACGCGGAGAAAACAGCCAATGAAGGCTTCAGGAATTATGACTTTCCATCAGCCACTACGGCCATTTACAACTTCTGGTTATACGAGCTTTGCGACGTTTATTTGgaATACCTTAAACCAGTCCTACAAAGTGACAACAAGGAAACTGTCAACACAGCGCGCAACACTCTCTACACGTGTTTGGAGAATGGTTTGATTCTTCTCAGTCCGTTTATGCCTTACGTGACAGAGGAGCTTTATCAACGATTACCACGCAGGACTGAGAACTCACCGCCAAGTGTTTGCGTTACACCTTACCCAGAGGAGCTTCCTTGGAGAGACACGACTCTTGAATATGAGATGAGTCTGTTACAAAGTATTGTGAAAACAATCCGTTCCATCCGTCAGGAGTATAATTTGAATCGTGCCAAAGCTGAAGtgtatgtgGTGTTCTCCGAGCAGTCTTTGGCAAAAACCGTCAACAAATACACGGACACAGCGTGCACGCTAAGCTCCAGTGAGAGAATTCATGTTGTGTGTGAAGAGAAGCCACCTCAGGGATGTGCCGTGGCTACCGTGTCAGACAAGTGTGAAGTGCACGTGCTTCTCAAGGGCTTGGTGGACGTAGCTAAAGAAATCACCAAGTTGGAGAGCAAAAAGGAGAAACTGAACGGCCAGCTCGGAAAATTAAGAGAAGCCATGGAAATGGCCGACTACGTTACAAAGGTACCGGAGAATGTTCAACAACAGAATACAGAAAAGTTCAAACAGTTGGAGACAGAGCTTGGAAAGATCGAGAAGGCGATCGCGTCCTTTAAAATGGCAGAATAATGGAACACAATTCACCTTCAATAATAGTCAATGAATGATATGCAATAAAAATGTCCAAGTTACAGCAACTGTCAGCCTGTTCCAGGCGTTTGTTCAGGGGGCAGCGGGAAGAATGGCGAGCAAAAGATAGGCTAGGGGCTTGGGAGGTGAGGAGAGGAGAGAGGATACCCGTTGACACCTATTCCCAGTCTTCAATTCTCTCCCTCTGCCCTCATTCAGCTCCCTTTTCTTTCCACTCACCATTCATCGTGCTGTCCCCCAACTTCGCTGAATCCGGCTACCTAGCTACTCTCTCAGTGCGAACCTGGACCTCGAACAAGGTCGTGACTGGTGAGGTTACGCTAGGGTACTTTAGAAACTAGGCGGTTGGCTCCTTTCGGACATACAATGCCCACGACTCTGTTTTAAATAGTTTACTATGGTTTTAACCAAAACTAGCTTGACATACACCAACAGGTGGTCTTCATTGAGTCAAATATTAGTTTCATTGTTCATTTATGTAACTTGTTTCTAGTTAATTTCAATTCAGTTATTTTCGTTCATTTCAATTATTGTGCGCTCGGTTACTTAAAATGGTAGTTAGTAATTTAACGTGCACAACTGACTTCTTCCCTATGGATTTTGCCAGAAGAATCCTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04462	Valine--tRNA ligase OS=Rattus norvegicus OX=10116 GN=Vars1 PE=2 SV=2
Q9Z1Q9	Valine--tRNA ligase OS=Mus musculus OX=10090 GN=Vars1 PE=1 SV=1
P26640	Valine--tRNA ligase OS=Homo sapiens OX=9606 GN=VARS1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002985 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08264 all species →	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013155 all species →	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR037118 all species →	Homologous_superfamily	Valyl-tRNA synthetase, tRNA-binding arm superfamily	Interproscan
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR002303 all species →	Family	Valine-tRNA ligase	Interproscan
IPR033705 all species →	Domain	Valyl tRNA synthetase, anticodon-binding domain	Interproscan
IPR010978 all species →	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11946 all species →	VALYL-TRNA SYNTHETASES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004832 all species →	Molecular Function	valine-tRNA ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006438 all species →	Biological Process	valyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000017867.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.