Gene detail

Detailed information of ENSOFVP00000018159.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020627278.1, probable ATP-dependent RNA helicase DHX58 [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000019668

AAGCGAATTCCCTTCTACACAAGTCTCGCCATGGAAATGGAACAGAGAGTACTTATTAAACGATATTTATCTTCTCTAGTTGACGATGTCATCCCAGTAGATATGTTACCGTATTTGTCTTGCTTGACGTCGAACGACAAAGAGGAGATTAGATGCGAGGAAACAAACCATGGTCCTATGCGAGCGACCCAAAAATTGGTGGAGAGACTTATTCGGAGACCAAACGCTTTTCAAGAATTCATTAGAGCGCTAAGAGAAACCGGCTGTCAACATTTAGCGGAACTTCTTTATCCACAAGAAGAAGATAATAAAGCTAGCTTTCAAATAACGGTTAGATTGGCTGACTCACAAATTTCTCGAAACTCGACCTTTTGGTTTCTCTCAGACGAATGCCCGGGGGGGGgagggcactcccataaagtcctaataggtgtgtgccCAGTTACCATGAGGAGCCGTTACGAGAAACAAATCCTAGATGCGAGACTTCAAGACTTCCACGAGGAACTCATCCCAGTCGACGTTCTTCCTTACTTATCTTGCTTACAAAAGGTAGACAAAGAAAAAGTTGAAGCCACACAGAGAAATGATGGTCCAACAAGGGCAAACTATGTTCTTGTTGATCGGATCAAGAGAAGACATAGAGGTTTTCAGGACTTTGTTCAAGCCTTGAGAAAGTGCGGATTCGAGCATACTGCCCTGCTATTAGATCCATACTACAGCTATCCAGTCGAGGCCGCGGATGATGAATCTGCTGACACGGATGGGTCTGGGATCGGTTTCAAAAAGATTGGAACAGCTATTGGTGATACAATGCAGTTGTCTGTGTTTGTAAACACCTCTAAAGGATCCATCATTGCCACTTTTCGATTGTCAAGTGAGAAAGCTGCCAAGGAACTGTGGGAAATGTACACCGAAGGGAAATTTGAAAGCACACTTCAAGAGGTCTTAGTGGAAAACACGTTGAAAGAAGATCATAAGGTCCCTGAGAAACCAATGGAGCTTAAACTCAGTCTTGGAGAAGATCGGTTTCAccaaattcaaaagaaacttgCTGAGATTGAGTCTGAACAGGAAGTCGCAGGAAATTTACAGGACATTTTAACGAGCAAGCAAGGTAAATTTGTTAAtgaaaaaatttcagaaatattttatatttattttctgtcTCTTTCGCTTTCTCTTGCAGTGTTCCTGGGAAGCAATGCCAACTCGTTTGGCAGGTGTGAGTTGGAGCTCAGGGAGTATCAGAAGGAGTTGGCTGCCCCAGCGATCGCAGGAAAGAACACCATCATCTGCGCACCCACCAACAGTGGCAAAACTTACGTGGCGTTAGAAATTGCTAAACAGCATCTTGATTCCTTCTCAACAGAGGCTGAAATTGCCGGCAACACCACCAGGAAAGAACCAAAAGTGGTCTTCATCGTGAGCACGTTGAACCTCGTTCTAcagcaaaaggatcgatttGAGACCTTCCTCGGAGACAAGTACACTGTGGGTGAAATTTCTGGAGCCAACGCAACAGAAATCCCTCTCAAGTATCTCCTTCAATACCAAAACATCGTTGTTATGACTGCTCAGATACTTGTCAACGCTCTGAACAATAAGAATAAGGAAGAGAGAGTGGATCTGCGTGACATCACTCTCCTGCTATTTGACGAGTGTCATCATGCAGACAAGGAACATTCCTATAACAGGATCATGGAAAAGTATCTTGCCTTGAAATCCCAGGCTGGAGCCCAACACAGCTTACCACAGgTTGTAGGCTTCACCGCCTCCCTCGGTACAGGAAAGGCTCAGAGTGTGGAGAAAGCAGAAAAGCACATTCTTCTTGTTTCTGCTAACTTAGATGCTGAAGTTATTTCAACTGTGaagaaaaatcaatctgagctGAAGAAGTACGCAAACGTCCCCGAAAGGGAAATAGCCTATGTTCAAAAGTCCAACGAGGACCCGTTTGTGAAGATTGTTTCACAGGTTATGATTAAAATAGAAGCCTTAATTAAGAAGGTTAAAGGAAAGTGCTTGAAAGCTGAGCCCCAAGACAAAGCTGGTCAGCAGTATCGCCAGTGGGTAGAAGAACTTTACAAAGACTCTGTCGCTGAAGGAGAGCGGTGTCTTGTGACGTATGCAGAGCATCTCCGTGAGTATCACATTGCACTGACTATCAACGCCAGTACCACAATGAAAAATGCCAAGAAACGCTTGAAAAGATACTTTGACTCCTTGGATAAAGATAAGTTCCTATCCATTGACGAACAGTTAAAGCGACTCTTCGAGCGTGCGATGAAAATACTGGATAAATACGTTGAGGAGAATGGTGAGCCCGAGAATCCCTTGTTAAAGCATCTCAAAGAGCTGATCTTAAAAAACTACACAGACCTGGACCCTCAGCAAGTAAAAGACCTCAATGGGAAGCTCAGCCAGGAAAAAGATGTCGGAGCAAAAGAAGCTGGGCAAGATGAAAACGAAATAGGAAAGAAGATTCTCGAAAATGAGAAAGACTcgaagtctggcaaggaagtaGAAAGAAGTGGAAGCAAAGATAGCGATGAAAAACACGGAAATGGGTCAGTAGATGGCACCAGCAAAGGCCCGGCAGGAGACATAACTTGCAATGGTGATGCCAGTGTAATGGGTAATGGTACAGACGAAGTGGAGAAAGGTGTGGCTGAAGAAGAACACAAGAAAGAGACAGACCAAGATGAGGACAAAGCCAGCAAATCAGAAGACACTATACCAGACAAACCTTCTGATGTGAGGAACGGTGGCCAAAAAGAATGGAAAGGTCCAAAGGGCATCTTGTTCACAAGGACTCGGGAATCCACAGAAGCCTTGTTAGACTGGATAAAAGAAACTAAGGAACTGAACGTTGTTCTCAGGCCCGAGCCGCTTGTTGGGAGTGGAGATGGCAACATTGGCATGACCCAGAATGAGCAGGACCGAGTCATCCAGAGATTCCACACTGGAGAGAAGAACCTTCTACTTGCAACTAGTGTTGCAGAGGAAGGTTTAGACATCAAGGACTGTAATTATGTCATCCGTTACAATATGATGGGCAACGAGATCTCAACTGTACAGTCACGTGGCCGTGTCAGGGCAGACGAGGGAAAGTATAGCGTGTTAGTTGGCCAAGACTCGGGAGCGTTGAAGAGGGAAAAAACAAGCCAGTTTCGTGAAAGCCTCATGATTGAAGCTCTTAGTCAGGTGCAAAGCATGGTTCCAAAAACATTTATGCAACAGGTAAAGGACATACAACTTAAGAACCTTCAGGATCGATTCCTGAAGAAGCACGCGATTGCTACGCTTAAGTCAGAGCATCTGCCAGGAGACGTCACCTTCCGTTGCCGGAAGTGTAACGTTGAGGCATGTCAAGCCCATGACATTCGAACGGTCAAAGAAAGTCACCACGTGGTCATCAACAGAGACTTTGAAAATTCCAAGgttgacaaaaagaaacatCCTAATCCTAAGATAATCGATGACATCGAAATGAACAAGAAGATCTATTGCAAAAACTGTCATGAAGACTGGGGGGTGACGGCTCTCATCTCTGGGGTGGAGTGGATGTGCATCAAGATTTGCAGTTTTGTTTTAGAATTCCCAGATCCGAATCCTCGTCGAAAGATTTTCAAGAAGTGGAAAGAGCTTCCCTTTGGTATACGAGAGGCGACCGTTGATGAGATTTTCCAACACGCAAAAGATGGAGCACAAGACGATCTCGATGTTGACTTAACTCTTTAA

Transcript

ENSOFVT00000019668

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYX4	Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Q8R5F7	Interferon-induced helicase C domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001752 (this species only)
Ubiquitin family	UBD\|Other\|CARD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF11648 all species →	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF18119 all species →	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR021673 all species →	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR041204 all species →	Domain	RIG-I-like receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000018159.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.