Gene detail

Detailed information of ENSOFVP00000018209.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: CAH3147025.1, unnamed protein product [Porites lobata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000019721

ATGTCGTCGTTAGAGAAGATGAAGATTCAAGGGATCCGGAGCTACTCCCATATTGAGCCCAGTATCATTGAGTTTCAGAAACCTTTGACATTGATTGTTGGACCAAATGGAGCAGGAAAGACTTCAGTTATTGAATGCTTGAACTACATGGCCACCGGAGACATGCCTCCAGGCAGCAAAGGAAATTTGTTTGTTCATGACCCTAAGGTTGCTGGTGAACAAGAAGTACGTGGTcaaattaaactgaaattcaGAGATGTCACTGGTAGTCCTATTGTTGTTACTCGGACATTGGTATCTCAGCAAAAGGGTAAAAAGGTGGAAACAAGGACAATGGAGGGAAACATAATGCGAGAAGAACATGGAGAGATGATTTCATTCCTTGGAGTGTCTAAAGCAGTGTTGGATAATGTGATTTTTTGCCATCAAGAGGAGTCTAACTGGCCTCTTAGTGAGGGAAAAGtgttgaaacaaaaatttgatGATATTTTTGCTGCAACAAGCATTGCTATTGGCATTATGTTGTTTTCAATTCTGCAGGCCCAAAGAGTGAAAGAGTATTCCATAGACTTGACCCACCTAAAGGCAAACAAGGAAAAGGCAGAAGAGatagccaatgaaatgAGACAAACACAAGGAAAGGTTGAAGCATCCAAAGACACAGTCAAGGAGCTGAATAAACGACTTGAACCAGTGGAGCTGAGGCTAGCTGAGCTTGCAAGCATTGCAGATGATGTGTTTCAGCTAGAGAAAAAAGTTGAGTCCTTGTCAACAGAAAAGAGGCAGCTCTTTAAGGTGGAGTCAGATCTCAAAGAAAAAATCACCAATCTCTTTAATGGTTCTGTGGAGGAATTACACCAGATCTGTGCAGCGTTTCAATCAAAAGTCATGGAAAAGGAAAAAGCCTTGATAGAGAATGATCGTAAACTACAGACGCTGAATAAAGACCAGCAGATACTGACTGCTGACCAGAATCAGCTACTGTTGGATCATGGGAAACTTGAACAGAAGAGACACAAACAAAATCTAAGTGAGAGAGACCAGGATATTACAAATCTTGCTGAGAATTATGACTTCAGAGGTTATGAGAAAGGCCCCTTTTCAGAGGAAAAAGTAGATCGTTTTCttggagaaatgaagaaaaaatatCAATCCGTTATTGATGACACAAAGCGTCAAAGGCAAGTATTTGACGAAAGCTTGAGTAAAGTACAGAAGAAACTTGACGATATGAAGAAGAGTCAAGCACAGTGTGAGGAAACTATTCGACTCAAAAACAAACTCATGAGGGAAAATCAACAGAAACTGAAACAAATCGGCCAGGAACTGAGTAACATGGATGCTTCGGCCAACAGACTGAAATCATTGGAGGAAGAACTGCAGCGGGCGGAGAGAGAGCTGGAAGGCGCTCAGGAAAGTGGCAATGTCAATGTGTTAGGCAAGGAGATTGATAAACTGCAAACTGAAAAGCGTGAAGTGGATAATGAACTACGTCGGTTGAGAGAAGAACAGCAAGCAATGCACATGCAGTCCACAACACAAGCTAAACTGGACATGCTGGCCAAAGACAAGAGCAACAAAGAGGATGCTATTCAAAAAATtatGGACCGCCATGAGGAAGATCTGAAATCCACACTGGGCACACGTGGTACATCAGAGAGCCTGTACACGAGATTACAAGAACATGTGAGGGTTAAACAAAGAGAACTGAAAGAAATGAGAAACAATCTACAGAAACAGAAGCAACTGCTGTCCTCCAAACAAATGCGTAAAAAGATGATCACAGAGAActtaaaagaaaaggagaatcAGGCACAGCAGCACAAAAGGCAGATTTCTGAAGCGTGTGGTGAGAATGACTATAACACTACAAGAGAAAACTTAAGCAGCAACATCGCCTCTCTGCAAGATGAACGAGGTATTATCGGCTCATTGGAGAAAATCTATTCCAAGTACGTTTCTAAACTGGAGAGTGAAGATGTGCACAAGAGTGGCTGTCCTCTGTGTCATAGGACATTTGAGAACAATAGACAGATTGCGGCTCTTGTCACTGAGCTGAGGACTAAGATTCGAACTCTGCCCGACAAAAGAGTTTCAAATGAGCAGAAACTTTCCAATGAACAAAAACGCTATGACCGTATTCTTGAACTGGCCCCAGCTAAAGAAACTTTGGAATCTCTCGAGTACAATGAAATTCCTGACGTTAAATCCAAATTGGAAGAGATAGAAAGAGAAGTGCAAAGAATTGAAGAGGAAATTACTGAGCTTGAAGACCTTCAAAGTATAACTGAAAGTGAGGAACAAAGTGCTCGACAAATGGAGCCTGACATCCGTATGTTGGACAAATACAAGACAGAACTGAAGGAAATGGACAGAAATATCTCTTTGCTGCAGTCTAAGCTACATGGAGTTGCTCCTGGTCGGACCATGCAGTCGGTCTCTAACGAAATCGCGGACAGGCAAGATCGATCGGACACTCTTAACAACAACATTGACAGAAAAAGATCACAGCTGAGCCAACTACAACGGCAGCTCAGTGAACTGGAAACTAACGTACACGATCTCAAGTCACAGAAGCTACGGCTAAAAGCTCAGTTACAGACGAGAACACACTTGGAGCAACAGAAAGCTGAACTCACCGCAAACAACAGTGCCTTTGCAAGAGAGATCAAGGTTGTTAATGGCCTTGCTTTCTTTCAGGCTAAACTTGAAGAGCTCCAGGCTGAAAAACAGGGCGTGGTCAGTCAGAAGGAAGCTGCGGACGATGGGAATCGCAAGTTGGTTAGTGCagattgttttgtttgtttagtaGGTAACACTTATTCACCGagGTATGTGAATCAAGGAGGCAACACAGCTCTACAAGACAATGAATCTCGCTTACAAGAACTGAAGGAACGAGCAGAGAAACTGAAAATGGATAAAGAAACTATTTCCAATGAAATTGATAAATTGAAGAATGACATTTCCAAACAGCAGATACGCGCTCGTGAACTAGAGGACAACATACAACTAAAGAGTACTCAAGAAGAAATCCAAAATATTGACAAGAAGATTGCAGATGTCAACAGGGAACTGCGCAAGTTTGGCGACAACGAGAACCTTATTAGCGAGAGACAGGAATTGCAACAACAATCTGACGAAATAAGGAAGGAGAAAGCGCACCACGATGGACGTCTGTTAGGATATGAAGAGGAAGTGAGGCGATGCCAGAGAGAATTGCGAAGTCCCTTGTACAGAGGTGCTGATGAGAAACACAGACAGCAAATCATCGCCATGAAGACAACTGAAATGGCGAATTCTGATCTTGAAAAGTACTACAAGGCTCTCGATAAAGCTATAATGCGATATCACGGTCTGAAGATGGCAGAGAtaaataaaatcattaaagaataTTGGATCAATACTTACAAAGGGAGTGATATCGACACTATCGAAATTCGTTCAGACGAGGAAGATGGAAGCGGAGCCATTAAAGCACGACGAACTTATAACTACAGGGTGGTTATGGTCAAGGGTGACACGGCTCTGGACATGAGAGGACGTTGTAGCGCAGGACAGAAGGTTCTGGCGTCGTTAATTATCAGATTAGCTCTGGCAGAAACATTCTGTTTGAACTGTGGAATATTAACTCTTGACGAGCCCACCACCAATTTGGATGAAGACAACATCGAGTCTCTGGCCAACCAGTTAGCTTCAGTTATAAGAACCAGGCAACTCCAAAGGAACTTTCAACTTGTAGTCATCACTCATGATGAAGAGTTTGTGGAAAATCTTGGCCGAAGCGACTTTGTGGACTACTACTTCAGGATTTATAAGGACGAGAGTGGCTTTTCAAAGATATCGAGACAGAGTGTAGCTTCACTGCATCGTGAGGAATCTCTTTTGGAATGA

Transcript

ENSOFVT00000019721

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1L8GXM0	DNA repair protein RAD50.L OS=Xenopus laevis OX=8355 GN=rad50.L PE=1 SV=1
Q9JIL8	DNA repair protein RAD50 OS=Rattus norvegicus OX=10116 GN=Rad50 PE=1 SV=1
Q92878	DNA repair protein RAD50 OS=Homo sapiens OX=9606 GN=RAD50 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001857 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13558 all species →	SbcC_Walker_B	SbcC/RAD50-like, Walker B motif	Domain	Interproscan
PF04423 all species →	Rad50_zn_hook	Rad50 zinc hook motif	Motif	Interproscan
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004584 all species →	Family	DNA repair protein Rad50, eukaryotes	Interproscan
IPR013134 all species →	Domain	RAD50, zinc hook	Interproscan
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18867 all species →	RAD50	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000722 all species →	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000794 all species →	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691 all species →	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880 all species →	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192 all species →	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305 all species →	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10866	RAD50; DNA repair protein RAD50	EC:3.6.-.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.