Gene detail

Detailed information of ENSOFVP00000018748.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020629060.1, glutamate receptor ionotropic, NMDA 1-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000020298

TGAAGATCTTGATGATCCTGACAAGAAACAGAGGCACATTAAATGCTCTGGAAAGGTGTACGGTGAACATGCCAAGATGGTGGATTCAAGCCAGAATGATCACTGCTGTTATGGAATCAAGTAGCAACAGCCTGGACTCGTTTCTCCGACCCTTCCAGATCAATTTGTGGCTGCTAGTTTTGCTCTCAGTCCACATAGTGGCAGTAATACTTTACCTGTTAGACCGGTTTAGCCCATTTGGCCGGTTTAAACTGGCTCGGAAAGAGAAGGAAGAAACTGCTCTGAATCTGTCCAGTGCCATGTGGTTTTCATGGGGAGTACTGCTGAACAGTGGCATTGGAGAAGGTACTCCTCGCAGTTTTAGTGCTCGGGTGCTCGGCATGGTCTGGGCCGGATTTGCCATGATCATCGTGGCCAGCTACACTGCTAACCTTGCTGCCTTTCTTGTTCTTGATCGACCAAAAGCTGTGGTCAGCGGTATCGACGATCCAAACcttcGTAACCCGTCGGAGAATTTCCCGTACGCCACTGTGGCCAATAGCAGTGTGGACGCGTATTTCAGAAGACAAGTTGAGCTGTCATCCATGTATACCTTCATGGAGAAGTACAATGTCAAGACTGCTAAAGAAGCCATACAGAAAGTGAACAATGGAGAATTGAAGGCGTTCATTTGGGATTCTCCTGTCCTGTATTATGAGGCTTCTGAAAACTGTGACCTCACCACTGCTGGTGAACTGTTTGGTCGGTCAGGCTACGGCATTGGGATGCCTAAAGGTTCTCCGTGGAGTAGTGAAATATCTCTTGCTATTCTGAATTTCCACGAGAGCGGCGTAATGGAAGAATTGGAGACCACATGGATCGACACCAAGAAATGCGATGTGCAGAATAATTCACCCGCCACACTGGGACTTAATCACATGCTGGGAGTGTTCATCATGGTTGCCGCTGGAATTGGAGCTGGGATTGTAATCATTATCCTAGAAATCTTGTACCACAAGCACCGCGGCTGGAAAGAAGAACAAAAAGAGCTGGCTAAAAAGACGACAGATAAGTGGCGAGCTAATATCATGATGATGAAGAAGGATCGAACCACAAATGGCCAACAACCCAATGGTGTTCTGGATTCCCATTCCCCACAGGCTGACGGAATAGCTCGCAGGAACCCAATCTACAACCCTGAAAATCACGTGGACAGCATTAATAAGTTCACGTATAACTAAACACGTGCGCGCTCTCCGCGCGTGTTATGTACATAGTACAATTGACAACGAGCGGTGAACTATTTCCAGGCTCAGTGAAACATTTATCAACCTGTAATTGATTACTTCTTTTATAACTAATTAAAAAGGAGAATACACAGTTCTAATCTTCAAAcacaaaaaaattgtgtaaaaaggtttattttatcattttacaCTGTAGAATTCACCCAAAAGGGTGAAAGTCACCCGAACAATGAATCCAATCGTGTTGGTTAATGTGTTATGTGGCTAACCCTAAGTTTTTCAGATACGTCGAAAATACTGTACTCTATGTTGAATTGCAATTGTCTTTAGCTGTTGggttttaaatagttttaacagaGGTTTTCAATCAGAGCCAAGGCTGGTCCTCTGCGCTTACTGACAGCTACGGCCGTTTTTTACCTTGTGTTTATTCCTTGTACaatattgaccaatcagaaagcaGAATGATAATAACGTCACAGGGTGATGTTACGGGTAGGGTTAGGCggagaagaaaaaattattttctcgTAACGACTGGGTGTAAAACGTCACAAGAATTCGAACATTTCTGGTACTATTGCTACCATTTAATTTCCCTGTTTTCTCGCTAACACATTTGTACAAGAAAACTACTTTGAAACGGATTGTGTACTAAGgtatatttaaaaacaaaactatttaTGAATATCACTAATTAATGTATTAtttattgcaaattgctctGTGGTAAAAAGCTATGCATGACTTCGATGCTTTGTTTATGTTACGATATACAGGACTGCGTGCGATAAATTTGTTATACATGCACAGCGAATCTATCTATCCTATTTGTGGAATACGGGCGCGATAAATTCAAATACCgggatttatttatttttctttacatAGTAACTGTACAAGGTAGTAATACCTACCTATTGGTTGTAATttataaaaacaaaagcaagcaatcaataaatttaaataacaCCAATTATTATTCGGAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1L8F5J9	Glutamate receptor ionotropic, NMDA 1 OS=Xenopus laevis OX=8355 GN=grin1 PE=1 SV=1
Q05586	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens OX=9606 GN=GRIN1 PE=1 SV=1
P35438	Glutamate receptor ionotropic, NMDA 1 OS=Mus musculus OX=10090 GN=Grin1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF10562 all species →	CaM_bdg_C0	Calmodulin-binding domain C0 of NMDA receptor NR1 subunit	Domain	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00497 all species →	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR018882 all species →	Domain	Calmodulin-binding domain C0, NMDA receptor, NR1 subunit	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR001638 all species →	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000018748.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.