Detailed information of ENSOFVP00000019264.1 in Cyphastrea salae

Genomic Location: chr3:21543233...21555791
NR annotation: XP_020619154.1, AT-rich interactive domain-containing protein 5B-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BM75AT-rich interactive domain-containing protein 5B OS=Mus musculus OX=10090 GN=Arid5b PE=1 SV=3
Q5ZJ69AT-rich interactive domain-containing protein 5B OS=Gallus gallus OX=9031 GN=ARID5B PE=2 SV=1
E1BLP6AT-rich interactive domain-containing protein 5B OS=Bos taurus OX=9913 GN=ARID5B PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004884 (this species only) · gene tree & orthology
Transcription factor familyARID · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01388
all species →		ARIDARID/BRIGHT DNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051232
all species →		FamilyAT-rich Interactive Domain/SWI1 Chromatin RemodelingInterproscan
IPR001606
all species →		DomainARID DNA-binding domainInterproscan
IPR036431
all species →		Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR043151
all species →		Homologous_superfamilyBromo adjacent homology (BAH) domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13964
all species →		RBP-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000976
all species →		Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSOFVP00000019264.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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