Gene detail

Detailed information of ENSOFVP00000019275.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020619154.1, AT-rich interactive domain-containing protein 5B-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000020827

ATGAACCAAGgaccacaatcttcttcatgGATCGGGGCCAGTTGTGGACGGCACAGCTCTTATACCTTCTACAGAGGTTTCAGATTAACTATCGATGGAGTGGTGAAAAATTTTTGCCTCGGAGAGTTTTATTTTGTGAGGAATTCCATAAACCAACCGATATGCATAGCTGAGCTACAATTAGTTTGGCACGATGCGACTAGTGACAGCCAGCTTGCTTCCGCGAGACTTTATTTCAGACCCGAAGATACTCCCGCAGGACGCCTTGCAAACCACGGACAGGATGAGTTACTTTATGCTGACCAGAAAGTTGTCATCAAGTGCCATGATATGGCTGTGTGGCAGGACTCAGGTCTCCAATGGAACTGTGGATTGGTACCCTTATGTGAAAGTGACTTTTTCTGTGTTGACCACAAATATTATCTGAACAGCAACTATGCTGTGAAGGAGaaagaaacattacaaaatgCCAAAGAAGTGTGGATGAAAGGAGATCACCCTCGCAACCTTCAGATCCTCACATTTCCAGCCTACTGTCGTTACAGGGGTCTGAAAAAGAGGCTCTTATCTGGCATGTGTTTGACAAGAGCTCAGTTAGTTGCCCTGGGAGGAGTTATTGCAGAAAATAGAAGTACACGGGTTCTTTTCTGTCGTGACAGTTTTCATCACCCTTACTTGGACAAGTTTGAATTATCTGGTGATAACAAAGCACCAGTTCTGAAAGGCAGGCCAAGGAAGAAAAAGAAGCTAAATGCAGCACAGAATAGTGTTCTTAAGAAGAAACGATTTGTGGCCGACATTCAAAATCATCTAACAAATTCACCTGCAGCAAAGAGATGCAAGCTATCAGAGGAAGAGGAGAGCACTGGGTCTGACATGTCAGAAGGGGTATTGGAGAGAACGAAGGTGCCTCCTGAAGTGGGACGGAAAGTTCAAAGTATTGGGCCGCCGCCATTGGTAAAGCCTAGAGTACAGGTTACAATTCCAGACAAGGCAGAAACGACTGACATTTCTAAAGTTGCTGCTCAAGATGTGCCACAGTCGAGAGGAGAAAACCCAAAGGTTCCTCCACCTCTTATTCCCTCCAATATGATAAGGAGAGATGTTGTACGTACTTCACAGCCACTTCAGTCCAGTCGCAAACATCTAAATGAGAACATTACTGAGTGTTCAAGAACAACACCAATTCAAAAGGTGATTTCTGCCAACAGTACAAAGCTAAGAAACATTGAAAAAGGTGTGAGTTCAGTTGTGAGAACAATTCCAACTGTCCAGGCAGATGTATGCTCACATACTGCCTCAAGAACCCGACCTTTGACCACAACACGGGGAACTGTCAGCACACATGTGGTAACATCCACTTGCGCCACAGTACGCAATCAACCCATAGCATCTCTGCAGCAGACCAACATTAGTGTCCAAGCAGTTACTCCCAAACCTCAGCAGGCTGTGACACCCTTGGCTGGGTCTATGTCATCTTCAGTGAACACCAGTGATGGAATGACTGCAACTGGTGGCTTATACTTGAAATCGAAGTTAAGCAAGGAGAATGAAGAGAGGCAACTGAGACCATGCATTTCAGAGGAGAAGAAGGAGAATGAGATTGAACAAACTGACGAATCTGTTGCttggaaaaagaagaaaaaaaggctACGAATGCCTGGCAATGTAAAGGATGAGGAGTATGACGGTGATGATGAAAAGGACTTCATGCAAGCCCTGCGAGATTTCATGAGGAAGAACAACCAACCACTTGGCAAGCTTCCTGCCTTGGGCTTTAAGAAAGTTAATCTTTGGACAATGTACAGCACTGCACAGAGATTTGGAGGATATGATGCTGTAACAAGCAAGCGTTTGTGGCGACGTGTTTATGACTCACTTGGAGGGAGTACAACAATAACTAGTGCTGCCACATACACCAGGCGACATTATGAAAGGTTGCTGTTGCCTTATGAGAAACACGTAAGAAACCAACTCAAGAAGCAGATGGATGAGAAAATTCCCTCTTCTGTCAACAGCCCTCTACAAAATCAGCCTCTCGACAAACCAGGGAAAAAGCAAGGTTTGACAGTTTCGAACAAAGCAAAACCTGACATTGAGACAGACAAGGCTGCTGCACTAAAGCAGAATCAAGGTACTGTAGGAGCTACTCCAGCAAGATCTCCACAGGATGGTGCTGTTGTGTCATCACTACAGTCATCACCTTACACCATGAACACCGCAACTGATGTAAAGGGAAACGCAGTCAAAACAACCGAATCAGGTCAAGTGCACTCTGTCACGGCATCATCTGTTAACAAGACTTCCTTTAAGCAAGGAATGTCGCCAGTTGCTGTTCGATCGTTCAAACAAGAACACCAAGAGCCCAAAACATGCAGTAGCAAGTCAAAGACAAGTGCAGCACCTCCCATCACCTCAGCAACTGAAAAACTAAACAGGGATACACCGACCGAACAACGAACAACTGAACATCGTTCACAAGACACAAGTCAGCAGAATAGGAAGTTAATGAAAACCATGCAGAGTGATGAGGAAGCGGGTGTAACAACCAACACGGTGTATGCGAAAAACACAGCTGCCGACACCAACCTAAAGCAATCTGTTCAGGCTGTTCCACTCCAGAGGGTCTTTAGAGGGGTACACGATGATAAATTGATGTCTCCTCCACCACAACTTTTAAATTCAGTAAGCAAAGGAAGAGAGATTATCGATCTAACCTCAGATGACAGCCCTCCAGGGTTGCAATCTAAGAGCCACCTTGTTCCGCACATTCAAGGATCTCAGGGAAATGCACAGGCCATGTCCAAGATGCGTAGGCCAAGTGGCGATGAAGACACTGAGGGGCGGAGGCATGTGCATAAATCACAAGCGAGGCACGAATATCATGAAAGCAGTAAAAGGCATCATTCCGTTAGGGAAGTACAGACGAGTGGAGAGGTGTCCTCAGTTTATGACGTGCAGACCTACggcattcaatcattcaataacAACAGAGTTCCACCTCACGCACAAGACAGCTCACCATCGATTAAGAAAAACAAGGACGAAGGCTATCCACTTGTCAAGCAAGAGGCATTCCTTCCAAAACGTGACAAACAGAGACATCAACAAGCACGAGTGGAAAGCTTGGAAGGACGATATACACACTCTCCCTCGTCAGACGGTGTTGATGAACATTTTGCTGAATGGCTTCGAAGGCAGTCTAGTGTTCAACATCACCGCCCCAATTGTAGTGTTGGTCACCACATACAGTCGCCTAATTCAGAGCTTGGCCAGTTCAGGTATGGCTATGTCACTGAGGACATGCGTGCTTCAGACTGTTCATGCTCTTTACCAACAAGTAGAAAAGATGAAATTGTTGCAATAGCCCCCTCAACAAAGGCAAAGAAAGAACACTATGAAGAGGATTTACCCTTTCCTGGTATCGCGATGTACCCAGGAAGGTGGAGTCCCTCCATGGTATCAGATCACCCTGATCTGTATATTTCCTCACATCCTGCACATCTGGGAATGCCAGCAGATACACTGGCCAGTCACATGTGTACTCCATCAAGAATCTTCATTCCTCCAGCCCAGATTTTTAGCCCTCCTTACCACATGGGCATGGCAGCCATGGGTGCTCCTCCCTTGATGGCTGGTACGGATGATCAACTGCACATTCACCCACACTGTTTGATGGCATCATCATATCCTCGCTCGTCAAGCTCAAGGACAGCAGATGGAACAGGTTACCCTCTGTACTCCTTCACATAA

Transcript

ENSOFVT00000020827

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BM75	AT-rich interactive domain-containing protein 5B OS=Mus musculus OX=10090 GN=Arid5b PE=1 SV=3
Q14865	AT-rich interactive domain-containing protein 5B OS=Homo sapiens OX=9606 GN=ARID5B PE=1 SV=3
E1BLP6	AT-rich interactive domain-containing protein 5B OS=Bos taurus OX=9913 GN=ARID5B PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004871 (this species only)
Transcription factor family	ARID · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan
IPR051232 all species →	Family	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13964 all species →	RBP-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000019275.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.