Gene detail

Detailed information of ENSOFVP00000019487.1 in Cyphastrea salae

Genomic Location: chr2:6712575...6721030
NR annotation: XP_020621828.1, myocyte-specific enhancer factor 2C-like isoform X3 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4UTP7	Myocyte-specific enhancer factor 2C OS=Sus scrofa OX=9823 GN=MEF2C PE=2 SV=1
Q2MJT0	Myocyte-specific enhancer factor 2A OS=Rattus norvegicus OX=10116 GN=Mef2a PE=1 SV=1
Q02078	Myocyte-specific enhancer factor 2A OS=Homo sapiens OX=9606 GN=MEF2A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002219 (this species only) · gene tree & orthology
Transcription factor family	SRF · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00319 all species →	SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	Domain	Interproscan
PF12347 all species →	HJURP_C	Holliday junction regulator protein family C-terminal repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002100 all species →	Domain	Transcription factor, MADS-box	Interproscan
IPR033896 all species →	Domain	MADS MEF2-like	Interproscan
IPR022102 all species →	Domain	Holliday junction regulator protein family C-terminal	Interproscan
IPR036879 all species →	Homologous_superfamily	Transcription factor, MADS-box superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11945 all species →	MADS BOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000019487.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.