Gene detail

Detailed information of ENSOFVP00000019938.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020616207.1, echinoderm microtubule-associated protein-like 2 [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000021490

ATGAGTACACCAAGATTTGTGACGAAGATTGTGGGTGGCAAATTAGTAACAGTTCCAGAGTACCGTGATCAATCCTCCTCAAGGCAGAGTGGCTACAGTTTAAAATCAACCTATCCATGGGGAACATTTGAACCTGTTGCCTCCCATAAGATTGGAAGCAGGACATATCCTGTCCTTCCACCTATCTCAAATCATGAGAGCCAACTTGCTCAAAGAGTGACAGATGCTCTTGCTAGTATCAGCAAGCAGAAGCTGTTAAATGTCAAGCACAAGTTTTCTCTGCTGGATAAGGACCGCTCTGGACGGATCACTACAGAAGAACTTCGACAAGTGTTCCTCAATTACCAGATATTTATTCTTGGCCCTACATTAATGGCGCTTGTGAAGAAGTTTGAAGTTGATGGTGGAGGGGTACTTCATGAACCTCTGGCCACATATTTGCTAGATTGTCATTCATCTGTAGTACCAGGATTGCAGGATAAACGGAAATTAAGTGCCGCTGGTTTGTCTAATCCTGTGCGAGTGAATACTGGTCAGTCTGGTGTTCAGGGCGATGCTGAGCTGTTGTTAGAGGTTGAAAATCAGTTAATCAAGGATAGAGGAAACTGGGATTACAGTGAATTGAAAACATCATTTCACCGATCACTTTTGGAAAAGCTGCTTGGCAGGTTTGATACAGATGGAGATGGCTGGGTAAACTGGAGAGATTTTTCAAGATTCATTGAAAAAGCTATGTCTGTAGTTGCCCTTGGAAGTTCTTTGAGATCAGAAGAGAAAGGTGCAGTATCTATTAACAGAAACAACAGCAGAACTGGTGCAGCTGTCAAAAAACACCACAGCAACTTGACAGCGAGCACAGAAACACAGACAAGCTCAGATGGCAATAATGGCTTTTTAAGAAGACAGTCCACACTAAAACACAGTGAAAGTGATTTTCAAAAGTCAGTATGGCCAGAGGATAAAGAGCCTGACCCAGTGAAGCTAACACTACGAGGCcgtaatatatatttatacCCTCCTGATGAGTACCTTGATATGGACATgtcaccccacccccctgagGAAGAACTGCAGTTGGAGTGGGTgtACGGTTACCGTGGACGAGACTGTCGTAATAATCTCTATGTGCTCAGTTCAGGGGAGCTCATTTACTTCACGGCTGCAGTGGTTGTGTTATATGACGTGGCAAGTCATAAACAGCGCCATTATACAGAACATACAGATGACATCAAGAGTCTGTGTGTTCACCCCGATGGTGTTACGATAGCGTCAGGACAAGTCAAGGGACACGGAAATGATGCGAAGCCACATATAAGAGTATGGGATTCCAGCTCTTTAGATACCATTTGTGTGATTGGTGTGGATTATTTTGAAGATGCAGTCTTCGCGCTGGCGTTCTCTAACAAGAGAAACCAGGGAGAATATCTTGCATCAGTTGAGGACAATGAGTATCACACCGTGACAGTGTGGGACTGGACACGGAAGAAAAAAATCACCTCGGCCAGGGGTAACATGAATCAAGTTTTGGCGGTGAGCTTCTCGCCGTTCGATAGCCGTCAGTTCGTCACGTGCGGTAAGCAACATCAAGTGACATTCTGGGAACTGGAAGATAACAACCTCAAGCAGTCAAGGGGAAGAATGAGTAAAAACCACAGGCCAAAGTATGTGTCGTGCATCGCATTCTCTTCAAATGGTGATGTACTCACTGGAGACACTGATGGCGGCATATGTGTTTGGCCAGAAGAATCCAATCAAGTTGCTGAAGAGCTGGGCGTAAGGAACGCTCATGCAGGCTCAGTCTACGCTCTTCTTGTTCTACCAAACGGTGCGGTACTCTCAGGGGGAGGTGGTGAGTCAACCGTGAGAGCCTGGAGCAGAGGACCGAAGTTAGTTCCCACAAACGTGGAGCTCAAGATGCCTAGGGATGTGATTGGAGTGCGTTCTCTAGCTTTAGGGACTTCAGATCATCATCAGCTTTATATTGGTACAGTCGATAACAACATCTGGTGTACATCACTTAACGCGGGCTCAGAGTCACCTCTCGTGGGGGCTGGTGCCAGGCTTGTGAAGATTATGGAGGCATCAGCTATGCAGGCAGTTGCTTTTCATCCTGATGGTAGCTCTGTGGCTGTGGGATTCAAAAAAGGAGGGTGGATGCTGTTAAATTCAGCGACTGGAGATGTCATTCTTGTGCGAAAATCTGAACCTCCGGAGACGATATCAGAAATTCAATTCTCACCAGATGGAAGTCACATAGCTCTTGGCTGTCACGACAACGATGTATACATATATGAACTACAAAATGGAGGAAAGTCGGTTTCTCTTAAAGCTCGTTGCAAGGGTCACACGAGCTCTGTGAGTCACTTAGACTGGTCCGAGGATGGAGAAAAACTTCAAAGGAGCCCCTTGCAGGGAGAACAGATAACCCAGGCAGAGAGCATGCGTAATACAAAATGGTCCACACAAAACTGTGTGTTGGGTTACCCTGTTATTGGAATTTGGCCAGATGGAGCAGACGGAACAGATGTGAACTCTGTCGACCGCGCGAAGGGAAAACAGTTAGTGGTAACGGGTGATGACTTCGGCAACGTAAATCTGTACAGATATCCCAGTGTCAGCGAAAAGGCCGAGCCCAAAATTGTGCATGGTCACAGTGCGCATGTCATGAATGTACGGTTCCTTTCCGATGACACCCGACTCATCTCCGTAGGCGGTCGGGATGCGAGTATTCTGCAATGGAAAATTGTGAAGTCCGCGTAA

Transcript

ENSOFVT00000021490

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TNG5	Echinoderm microtubule-associated protein-like 2 OS=Mus musculus OX=10090 GN=Eml2 PE=1 SV=1
Q6P6T4	Echinoderm microtubule-associated protein-like 2 OS=Rattus norvegicus OX=10116 GN=Eml2 PE=1 SV=1
O95834	Echinoderm microtubule-associated protein-like 2 OS=Homo sapiens OX=9606 GN=EML2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001441 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF03451 all species →	HELP	HELP motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR005108 all species →	Conserved_site	HELP motif	Interproscan
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.