Gene detail

Detailed information of ENSOFVP00000020251.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020606958.1, high mobility group protein 20A-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000021803

GGAGTGTGGCAATACCAGGCAATGGAGTAGCGACATTTGCTGTTAGTTCAAGTGGTGCTCTGGCTTGTCCAGGTGGAGTGCTCAACAGCCAAGTTGCAGTTGTCACAGTTCCCGAAAGCCAGCTATTTGCTGTTCAGCAGTCTCAGCAAGCTGATTCTGTTCAACAGGAAACTGACTTAACCAGTGAAGATGATATCACATCTGTCACAGGCAGTGTGTCAAATGTTAGTGATCCAAATGGGCTGACAATAAATGTTACTTTACAGCCTCACTCTGGTTCTTTGTCTGAAGATGGGGTGTTGCCTGAAGGGGTGCCGAGCAGCACACCTGGTGATCCAAAGCAGAAACGAAAAGGGGGTTGgccaaaagggaaaaaaagaaagaaggaatTTGCAGATTTGAATAAACCAAAAGCACCAATTACTGGGTATGTGAGATTTATCAACAGTCGTCGAGCTGAAGTGAAGCAACAACATCCTAATTTACTGTTTCCTGAAATAACAAAGATACTTGGACTGGAGTGGAGTAATCTGCTTCAAGAGGAAAAGCAGAAATACCTGGATGAAGCAGAAGAAGACAAAAAACGCTACATTGAAGAGCTTAAAATTTACCAAGAGTCTGAGCAATACCAGGCATTTATGAAAAGACAAAATGCTAAGAAAATCAAGACCATTGTGGGGATAGATACTACTGAAGAAGTGCCCTCAAGCTTACTGTTGAGCGAACAAATGGAAGATGACGCTAACGAATTGTACTGCAGGGTCTGCAACCAGTTCTTCAGCTCCCCTCACAATAAGAAAGAACATTTGTTTGGAAAACAGCATTTACTGATGCTCACTGGAGAGTTTGAACGCGAAGCTGAGCAAAATGCTAATGGCACTGACAAGATTGTGAGTGACTCTCCTGACCTGGCTCCCTGCAGTGCTGTGGCAGATACTGTAGCAGCAAATATGATACCAACTGAATCAATGCTCACTATCTCACAGTTTACCGAGAAGTTCTTGGAACAAAACTTGAACAGAGAGCTTGAACTAAGGGAACTTCGGAAAGTGGTTCTATCCTCACAAGAGGAGAACATCTCGCTCAATAAAGAAATGGAAGACCTTAAGAGTTTGTTACAGAAAGTAGAAGACGATCTTGGAGCAGTGAAGGCGTATGGAGCATCACTTACAGCCCAGCGCAATAGCCTAAGGATGGTACCGAATCTCTTTGGTGTAATTAACTTCTAACCTGTCCAGTTTGACTAGGTTGGCTCCTGTAGACTGCTGCCTCTCTTTCAGGTTGTAAACATCAACCCAAGAGAACAGTACAACAGGAGCATAAACTGCTACCAGCCTGAATATATGGTTTTTTAATGGGATGATCAAGCTTAGAGGATGCTTGGCATTTTAGAGGCCAATACTTGTCGAAAGCATCGCAAGTATGTTGGCGCATGAAACGAGTTGTAGTCCCCGGGCCATGGACGATCGAATCTGGTCTTCATGTTCTTCTgctttttggtgtttttctaacAGTAGGCTTAGCAACCTACAAGAATCGGAAGTTGCCGAGGAGGCTACGATTCAAGGAACGAAAGAAAATAACCTTGAATACGAGCTATGGTGGTGTTCCAGTTGTACTATCAAAGACTGTAAATCCATTGGGAAAAAAAGTGACGTTTAATCTCAATTTGTACATAAATTGGCAAATTGCAGGTCAGTTATAAGTGTAGCGGGTCCAAAACCTCATATTGAACCGGCACTAGTGGGCGTATCTACTGGAgggaaaaaagtaaaacaaacaaatacaattaaaagaaatatatagAGTTTAAGTAATTATTTTAATTCCAGTTGTAGTCCCCAACAAAGCGTGACTTGGTAAGATGTATATTGTGTAGGAACTATTTAACTGTGTAATATTGACTTACGAATGAAGTAAATACCTTTTACTATAAGGTAATAGGATAAAGACATGCATATCTTATGATATGTTTTCGTTTGAAGCTTGGCACCGTTTCTTCACTTGTCCTCGTATTTATAACAAGTACGCGAGAAAAAgaatatttaatatatttttcgcATTTTACTGCGCCGTATTGCATGTATTCACGCCTGGGGCTGTTGTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32L68	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related OS=Bos taurus OX=9913 GN=HMG20B PE=2 SV=1
Q9P0W2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related OS=Homo sapiens OX=9606 GN=HMG20B PE=1 SV=1
Q9DC33	High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009876 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR051965 all species →	Family	Chromatin Regulation and Neuronal Gene Expression	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46040 all species →	HIGH MOBILITY GROUP PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24650	HMG20B; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.