Gene detail

Detailed information of ENSOFVP00000020932.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020612302.1, DNA (cytosine-5)-methyltransferase 1-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000022523

ATGGAGACAACAACTGTGGGAgaacctttggaaacaaattcaaAATCCTCCTCCAAGACATATTACAAATCCTGCACGAAAAGTGGCGTACAGTACAAAGTGGGAGATTGTGTTTTCCTCGGACCAGAAGCATTTTCATTCAATGTGAAACCAAAAGAGACAAAGAAAGGTTTCAAGAAAAGTGACAAGGTGGATGAAGAAGTGTATCCAGAATATTACAGAAAGCCAGCAGAGTATGTGAAGGGTAGCAACTACGACGTGCCTGAGCCATTCAAAATAGGTCGCATTATTAGCATCTTCACAAAGTCAAGTTCAGGGAAACTGACGGAAGAATTAGAAGTTATGCTGACTGTCAACAAATTTTATAGGCCGGAGAATACGCACAAAGGTTCTAGTTTTGGCCATCAAGCCAATCTGAATTTGCTTTACTGGAGTAAAGAAGAGGCAACTGTCGCCGTTGACGATGTGTTAGGTGGATGTGTTGTGACATGTGGAGAAGATCTTAACTGCTCGGTTGAAGAATACACAGCCAGAGGAATCAACTATTTTTACTTCTTAGAGGCGTACAACAGTGAAGCAAAAGAGTTCGAGGAACCTCCGATGGAGGCGCGAAGCGTCGGAATGAAAGGAAAGGGCAAAGGAAAAGGGAAAGGCAAGGGCAAGGGTAAGGCATCTCCTGAAACAGAGGACCAGTGTTTAAAGGAAGATGGCAGTGATAAAGCCAATCAAACAGTCACCAAACTGCGGTGTCTGGATGTTTTTGCAGGATGCGGTGGTCTGTCGGAGGGTCTTCATCAGGCTGGCGTGGCAGAGTCCCGGTGGGCCATTGAGAAAGAGGAGCCCGCAGCAAGTGCGTTCAGTCTTAACAATCCCGGATGTACTGTTTTCACTGACGACTGTAACTTGCTGCTGAAGCTCGTCATGGATGGAGAAAAGAAGAACACCAAAGGACAAACACTGCCCCAGAAGGGAGAGGTGGAGATGTTGTGTGGTGGCCCCCCTTGTCAAGGATTCAGTGGAATGAACAGGTTCAGTTCAAGGGACTactcacagttcaagAATTCTCTAGTTGTATCGTACCTCAGCTACTGTGATTACTATCGCCCGAAATTTTTCATCCTCGAGAATGTTCGTAACTTCGTATCCTTCAAACGAAGCATGGTACTGAAGTTAACTTTGCGCTGTCTGCTGAAAATGGGATATCAGTGTACGTTTGGTGTACTTCAGGCCGGTTGTTATGGCGTTCCACAGACCAGGCGAAGGGCCATTATAATGGCGGCTGCTCCTGGTGAAGTGTTACCGCTGTACCCGGAGCCCACGCACTGTTTTTCTCCCCGGGCCATTCAACTCACGGTCATGGTGGATGACACTAAGTTTCAATCGAATATCACTCGGCTATCGTCGGCTCCATACCGAACGATCACCGTACGTGACGCCATGTACGACCTCCCAGAGATCAGGAACGGCGCATCAAATGACGAGATCTCCTACAGTGGGGATGCCATCTCACACTTCCAGCGACAAATTCGTGGCAGTCAATACCAACCAGTTCTTCGAGACCACATTTGCAAAGAGATGAATCCGCTTGTTGCAGTACGCATGCGTTACATTCCGACTGCTCCTGGCTCCGATTGGAGAGACTTGCCAAATAGCATTGTACGTCTGTCAGACGGTACCCATACCAAGAAACTGGCCTACACGCACAATGACCCGAAAAATGGTCTCTCATCCAACGGCGACTTACGTGGAGTGTGCTCATGCGCAGAAGGTAAACCATGCGATCCCGCTGACCGTCAGTTCAACACCCTTGTACCGTGGTGCCTTCCTCATACGGGAAACAGACACAATCATTGGGCGGGACTGTACGGCCGACTGGAGTGGGACGGGTACTTTAGTACCACCATAACAAATCCTGAGCCCATGGGAAAGCAGGGACGAGTTCTCCATCCAGAGCAGCATAGAGTGGTCAGCGTCAGAGAATGCGCCAGGTCCCAGGGTTTCCCCGACACGTATCGTTTCTATGGAAACATCCTCGATAAACATCGGCAGGTTGGTAATGCAGTCCCGCCTCCTTTGGCAGCCGCCATTGGCCGTGAGATCAGGAAATCTCTGCTGGTTGGATCCAAATCTAGCCCTAACCCGGAATAA

Transcript

ENSOFVT00000022523

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92072	DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus OX=9031 GN=DNMT1 PE=1 SV=1
Q24K09	DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus OX=9913 GN=DNMT1 PE=1 SV=1
P26358	DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens OX=9606 GN=DNMT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003199 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00145 all species →	DNA_methylase	C-5 cytosine-specific DNA methylase	Domain	Interproscan
PF01426 all species →	BAH	BAH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031303 all species →	Conserved_site	DNA methylase, C-5 cytosine-specific, conserved site	Interproscan
IPR001525 all species →	Family	C-5 cytosine methyltransferase	Interproscan
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR050390 all species →	Family	DNA Cytosine-5 Methyltransferase	Interproscan
IPR001025 all species →	Domain	Bromo adjacent homology (BAH) domain	Interproscan
IPR018117 all species →	Active_site	DNA methylase, C-5 cytosine-specific, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10629 all species →	CYTOSINE-SPECIFIC METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003886 all species →	Molecular Function	DNA (cytosine-5-)-methyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010216 all species →	Biological Process	obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation	Interproscan
GO:0010424 all species →	Biological Process	obsolete DNA methylation on cytosine within a CG sequence	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1	EC:2.1.1.37	Prokaryotic defense system	ko02048	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.