Gene detail

Detailed information of ENSOFVP00000021480.1 in Cyphastrea salae

Genomic Location: :...
NR annotation: KAJ7390027.1, mitochondrial large ribosomal subunit assembly [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSOFVT00000023130

TAGACCCAGAGGCAATAACTTTGGACCACGATTTTCTTCGTTTCAAGCAAGGTCTCGCCCTCGTTTTGTTCGTCCACCTCCTCCTCTTATGAGTCGTTCATTTGCGGGTGACTTTTCTTCATCCCAAGATTTCGTTATCGGTGGGGGCGCAATTCAAGATAGCACCCCGCCATCATCAAAAGCAATTCAGCGTAACTGGAAGTCAAACcaagaaactttgaaaactCGCCATTTTGTCGGTTGCGAAGCTGCGCAACGATTTCCTAACGCCAAAGAGAAGCTGCATAATATTATTCAAGGTGCTATGAAAGGAAATGCGTTGACTTTCAATGGCAAACATGTGGAGGACGTTTTTCAATGCACTGTGCATCTTCCCTGGCCACGGCCAATGTCGTTTTATGGAGAAGGTTCGACGAAGCGAGAAGCTGAGAAAAACGTAGCGGCCATTGCTTGTGTCGAATTGGAGAAACTTGGAGTTGCAAATTTGGGAGCAGCCACTATTTTGAAGAAAGAAGCTGTGGAAAACAAAGATGAACCCAAGTGGATTTACATAGACGAGGATCGATTGTCAAAAGTAGAAtcatttttgttaaaaaactcAGTTCTTAGTCAGCAACTATATGGACCACGAAACCAACAACCTATGTTTCAGAGTGGCCCAGTCCAAGCAACTAAACCATCACAAAGTTCTGCAGTGAAAGAAAATTTTCCTGGAAGCAGTACCTTGAGTCAGTCACTAACTCCAACAGACTGTGCTTCTGCTGAAGCCAGTAAGAATCAAGAATTCTGGCAAGATGCTGAAATAGTTAAAGATGAGGATTTTTCCAACTGGGAGATGCCACATACACCAAGCACTGCATCGGGCAAAAATTCACAGAACAATCCTGACAACTTCACATCTGAAAATTCTACTGCGGCGTCTGGTATgataaaagacatatttactGGTTCACCTTGGAGGCCCTTATCAGcggaaaaacacaaaaaacttGATGGACAGTTGCTACAGGAGTTTTCGCAAAGACAAAATATGTTGGAGTCAAGACTTTCTTGGTTCAGTGAAGACACAAAGAGGTTGCCTGTTGCAAACCATAGGGGAAAGATCATTGATTTGATTGAAGCAAACAAAGTGGTTGTTTTGTCTGGGGAAACAGGATGTGGTAAAACAACGCAGATTCCTCAGTACATTCTAGATCATGCCATACAGAATGGTAGAGGATCAGCATGCAACATAGTAGTCACACAGCCACGCCGTATTGTAGCAATGTCAATAGCAGAGAGAGTGGCTTCAGAAAGAGGAGAAATGTTGGGAAAGAGTGTGGGATACCAGGTGAGACTAGAGGGCAGACCACCTTCACAGCAGGGCCGGATATTATTTTGCACAACAGGAATACTATTGAGAAGAATGCAGAATAACACACTTCTAAAAGGTGTCAGTCATGTCATTGTTGATGAGGTGCATGAACGAGACATCAACACAGATTTCCTCCTGATTCTTCTTAGAGAATTACTCAACAAGAACCAGGAACTGAAGATCATCGTGATGAGTGCAACTGTTAATTCAGAGAGGTTCTCTCAATATTTTCATGGCTGCCTGAGTCTGACCATTCCAGGATTCACTCATCCCGTGGCTGAGTACTTTTTATCTGATGTCCATGAAATGCTGGGTCAAGTATTACCACACCCCAGCCACCCACAGGGCAAACGATTCAAGCCAGACAGCAGTTTTAAGGTCAATAGTCCTCAAGACAGCCCGGAAGCAGATGCTGAACTTGTCAGTGAAACAATTCTTTGTGTGTGTAGGAATTACCCTGAGGGAGCTATTTTGTGCTTTTTGTCTGGTTGGGATGAGATAATTGTTGTCCATGACATGTTGTCAAGTAAGATACAAGACGTAAGTGATTTTAACTTAAATGTATTGTCAGCAACCAAAGTATTCAGAAAAAGTGAACATAGAGATAAAGCACATTATAGAGTACCAGTCTTTGAGTCTTTGACAAGAT

Protein

Uniprot

Uniprot term	Description
Q5ZI74	ATP-dependent RNA helicase DHX30 OS=Gallus gallus OX=9031 GN=DHX30 PE=2 SV=1
Q5BJS0	ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus OX=10116 GN=Dhx30 PE=1 SV=1
Q99PU8	ATP-dependent RNA helicase DHX30 OS=Mus musculus OX=10090 GN=Dhx30 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan