Gene detail

Detailed information of ENSOFVP00000022347.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020616436.1, vacuolar protein sorting-associated protein 41 homolog [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000024073

TATCCTGTCTTACATGACCAACATCGAGGCAGGAACAAGaaagAAAGGTGAACCATTAGTTGCACACAGACCACAATTGAGGATTGTAACACCACGTGGCCTTAGTGATCCTGAGGAGATTTCAGCAGATGCTCTGTCCGTCAGAGGATTTGAGCAGTACCGTTGCGATGATTATCATTTAGCGTCTTTTCATGACGATCTGGACATTCCTTCATCTTCCTTTCATCCTGAAAATGTAGCAGAAGAGAATTTGTTTTACATTGTTAGCCCTAAAGACCTTGTGCTGGCCAAGCCTAGAAACATTGACGATCACATCAAATGGCTCACAGATCATGGAAAATATGAGGAAGCATTGGTCGCTGCAGAAACAAACAGTAAAGAAGTCAAGAAGCACAATCAGCAGGATATTGGAAGAGCTTATCTGAAATCTCTGATGGAAGAAGGAAAATACGAAACCGCTGCCAGACTGTGTTTGAAAGTCTTAAATGATGACAAGAAACTTTGGGAAGATGAAGTGTACAAGTTTGCAAGGAAACACCAGTTGGAGGCCATTGCACCGTATATTCCAACAAGTACAGTAAAGCTGAACCCCGTAATTTATGAAATGGTCTTGTACGACTTCCTCAAGAAAGATGACAAGAAATTTCAGGCCCTGATCAAGGATTGGCCAGCAGATATATACAGCGTGCAGCCCATTATCAATGCTGTACAGGACCAGTTGGAAAAAAATCCTCAAAACCGAGTTCTTCTGGAAACACTTGGAGAACTCTACACACGATTGAAAAGATATGACAAAGGACTGGCCATATATCTGAAactTGGCCACAGTGATGTGTTCAACTTGATCCATCAACACAACTTGTTTAATTCGATCCAGGACAAGATTATCATGTTGATGGATTTTGACAAAGAGAAAGCCGTGAAGATGTTGATTGACAATATCGACAAAGTTCCTGTCGAAGAAGTTGTACGACAGCTGAACAAAAGATCGGAACTGCTTCACGTGTATTTAGACACGCTCTTTGTTAAGGATCCACAAGCAGGAATGGATTACCACGAACTACAGattCCTCTTTACGCAGAGTTTGACCGCCCAAAACTGCTGACATTCCTGAGAAACAGCAACTACTATCCTCTACAAAAGGCTTTGAACGAGTGTCAACAAAGACGTCTGGTTCCAGAGATGGTGTTTTTGCTCAGTCGTATGGGAAACAACAAGCAAGCTTTACAGCTGATTATTCAGGAGGAGAACGATGTAGAGAAGGCTATTGAATTCGCCAAGGAACAAGATGATGAAGACTTGTGGGACGATCTTATCAATTATTCTCTTGACAAGCCAGAATTTATCACAGGCCTCTTGCAGAATATCGGAACCCATGTGGATCCTATCAAACTCATTCAGAGGATACCTGAAGGAATGAAGATTCCTGGTCTAAGGGATTCGCTAGTGAAGATCCTTCAAGATTTCAATTTACAGATTTCCCTCCGTGAAGGCTGTAAAAAGATTCTTGTTAAAGACAGTGTGTCTTTGCTTCAACGGTTGAGTAAAGTACAGCAGAAGGGAGTGTCTGTTGACGATGAAACCAAGTGTCCCGCGTGCCAGGGAACCGTCATTGCCGAAGATACAAGACGAGCCTCGCATGTTGTCGTGTTCTTCTGTAAACATGTTTATCACGAAGACTGTCTTCCAGCGCGTGATGTGGGGCCGTTTTGTCAGATCTGTACGGCACACAGTCAAGTGAAAAGACGGCGATCTCGTCACGTACAGGGCAATGAAGCAAGACCTTAAACTATGAATTCAAATTGTGTATGCATTGATGACATCAAGTACAGACATGAACCAAATTAACCAAGTCCAAGATACTCCAGCCGTCCTATGATTCAGGAGACTTCAAGACCGACCAAGCTTGCTTCTCGTGGAATAATTCATTGTTATGAttgtaataaaattaaacaGTCATGCGTTGCAACAATTTTTTAATAGTGATTTCAGTCAGTCATTGGCCGGCCGATCCCACTCCTTGTCAAGGAGGAGTCTGTGATAGACAATAATGGACCAATCATGTGACTCGCAGAAAGCGCGGGAAACCATGCAAATCAGCATTATATAATAATACAGTAATAATTGCATAACtcaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7F590	Vacuolar protein sorting-associated protein 41 homolog OS=Danio rerio OX=7955 GN=vps41 PE=1 SV=1
P49754	Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens OX=9606 GN=VPS41 PE=1 SV=3
Q5KU39	Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus OX=10090 GN=Vps41 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004220 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10367 all species →	Vps39_2	Vacuolar sorting protein 39 domain 2	Domain	Interproscan
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR045111 all species →	Family	Vacuolar protein sorting-associated protein Vps41/Vps8	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019453 all species →	Domain	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12616 all species →	VACUOLAR PROTEIN SORTING VPS41	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0009267 all species →	Biological Process	cellular response to starvation	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0034058 all species →	Biological Process	endosomal vesicle fusion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000022347.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.