Gene detail

Detailed information of ENSOFVP00000022380.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: MCG8117700.1, DDE-type integrase/transposase/recombinase [Candidatus Thiodiazotropha taylori]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000024109

CGAATCCTCAGGAAAGAATTCACCTGATGAAAGTTTTTCTGATTACCGGGAAAAAATCTCAAAGGGGAATTTAATTGCTGAACAGCATAAAGACCCAGATATATCATGCCTGTTTCCAAGAACCGTGGATGAAAGTGAAGTTTCAAGTAATCCCATCTGCTACTTTATTAAGAATGGAGTCTTGATGCGAAAGTGGAGACCACCCGATATTTCTGCTGAGGATGAGTGGGCTATCAAGTACCAGGTTGTTATCCCTAAAGCTTACCGAGTAGAGATTCTCAGCATGGCACATGAGACTCCACTTGCTGGACACCTGGGGGTCAACAAGACCTACCAGAAGATATTGAATCATTTTTACTGGCCCAACTTGAAGAAGGATGTAGCTGAATTTTGTAGATCTTGTAATACCTGTCAAATTGTTGGGAAGCCTAACCAGTCCATCCCTAAAGCTCCACTTCAGCCAATTCCTGCCTTTGAGGAACCATTCAGCAGGATAATTATAGATTGTGTTGGTCCTCTACCCAGAACGAGGTCTGGTAATCAGTACCTGTTGACAATCATGTGTGCCTCCACCCGGTTTCCTGAAGCCATTCCTCTCAGAAATATCAAGACCAAATCCATTGTTAAAGCTTTAACCAAGTTTTTCTCACTGTTTGGCCTACCGAAGTCTATCCAGTCTGATCAAGGTTCAAACTTTATGTCTGGTGTTTTTCAGCAAGTTATACATGAACTGGGCATTAAGCAATACAACTCATCTGCCTACCATCCTGAGAGTCAGGGCTCACTTGAAAGGTTCCACCAGACATATAAGAATATGATTCGCACCTATTGTTTTGACACGGAGAAGGACTGGGATGAGGGCGTCCATCTACTTTTGTTTGCAGCAAGAGAGTCAGTTCAGGAGTCTTTAGGTTTTAGTCCATTCGAGTTGGTTTTTGGACACACTGTGAGAGGACCTCTTAAACTTCTTAAGGAAAAGTTCATTTCGAGTAGTGATGAGCCTTTAAATCTTTTGCAGTATGTATCAGATTTTAGAACGAAACTTACAAGAGCATGTGAGTTAGCTAGGGCAAATCTAGTTTCAGCTCAGAAATCAATGAAATCTAGATATGATCATAACACAGTTAGTCGTACCTTTAAACCTGGTCAAAAGGTTCTTGCTTTACTTCCAGTTTCGGGAAACCCACTAAGGGCAAGGTATTTTGGTCCTTATGTTGTTGACAAGAAATTAAGTGACCTTAATTATGTCATAGTTACCCCTGACAGGCGTAAGAAAAAGCAACTATGTCACATTAACATGTTGAAGTCATATATAGATCGAGATAGCACTGTAACAGTTCATCCTGTTAATGTAGTTACATCTGATCCTGATGAGGTTGTAAGTAGTTGTAGTGAGAATTTCAATCTACCTGGCACAGCCAAGCTCATGAACTCTGACATTCTTCAAGATCTGGATTCCAAATTATCCCACCTTCTACCATCACAGCGCCAGGATCTGGAGCACCTGCTACAAGAGTTTGAGCATTTATTTCCAGATGTCCCTACCAGGACAGACAAAATCTATCACGATGTTGATGTTGGCGATGCTACACCAGTGAAACAACATCCCTACAGGTTGAATCCAGCAAAGCAAAAGTATTTACATGAGGAGATTAAATACCTGTTAGAGAATGATTTCATTGAACCCAGCAAGAGTAATTGGAGTTCTCCATGTATCCTTGTTCCAAAACCTGACGGATCATACAGAATGTGTACTGATTACCGAAAGGTGAACAATGTTACCAAGTCAGACACGTTCCCAATTCCCCGGATAGATGATTGTATTGACAGAATTGGGTGTGCCAAATATGTAACCAAGTTTGACTTACTCAAAGGATTTTGACAAGTGCCACTCACTGACCGTGCAAAAGAAATTTCAGCCTTTGTTACTCCTGACGGGCTGTTTCAATACAAAGTTGCACCATTTGGAATGAAAAACTCTCCAGCCACATTTCAACGGCTCATTAACAATGTTATTGCTGGTCTTGATGGATGTGAAGCTTATATCGACGATATCATCATTTATAGTGACACCTGGGAGGATCATCTGAGAATTATCCGAAGTTTATTCAAAAGACTGACTGAGGCAAAGCTCACAATCAACCTTGCCAAATCCGAGTTTGCTCGTGCGTGTGTGACCTACTTGGGTCACGTGGTTGGACAAGGTCAAGTCAAACCTGTTGatgctaaggtcaaggtcatttctGATTTTCCTCGACCAGAATCCAAGAAACAGTTGATGCGTTTCCTGGGTATGGCTGGTTATTACCGCAAATTTTGTCGAAATTTCTCCACTGTTGCTGAGTCCTTGACACAGTTGCTAAGTAAGAAAGCTAAGTTTCTCTGGAATGGAAAGTGTGAACAAGCCTTTGAGGAACTTAAAGCTATGCTGAAGAGTGCACCAGTACTTTCAGCACCAGACTTTGATCGTCAGTTCAAATTGGCAGTTGATGCAAGTGATGTTGCTGCCGGTGCAGTACTGTTACAAGAAGACAAGGATGGGGTTGATCATcctatttcttatttttctaaGAAATTTAATACCAATCAGAGAAATTATTCCACAGTTGAAAAAGAGTGCttggctttagtttttgctttaCAACATTTTGAGGTCTATGTAAGTTCTTCTTGTACACCAGTCATTGTTTTCAGTGATCACAATCCTCTTGTATTTCTACACAAATTAAAGAACAAGAATCAAAGGTTACTTAGATGGAGCTTGATGTTACAGGAGTACAACTTGGAAATTAGACATATTAAGGGCAAAGACAATTTAATTGCTGACTGTCTCTCCAGAGTGTAACTTGGAAGTGTTCACATAACGAGCCCTTACACTAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888 all species →	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000022380.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.