Gene detail

Detailed information of ENSOFVP00000024472.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020618474.1, AP-5 complex subunit mu-1-like isoform X1 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000026504

CCAAGTCGTCTAAGACGGAAGCTTGTCTTCCGGTGTTAAGGTCAGACAAAACCTTTTTCGATGAGCTTGCGAGGCATTTGGGTGTTTTCAGCTGTTAATACTGAGGCTGAATGTTCTCTCTTCTCAAGGCGTTTTCCAACCATTGAACGGCGAGCAGCGTTGTACCAGGAAGGAAGAAGTTTAACACCAATCCCAAGTGATCAAGAACTTGGTGATGCTGTGTTGAAGGAATTGGGATTAAGAAGGAAACTTGGAACTTATCAGGATGAGTTTGACAGAGATGTTGATTCCTGTAGTAAGCCAGAACACAAACCTGTCCATGAAGTAAGAGTGAAAGAAGGTTTTTTGTGGCCTGTTGTTGCAATAGAAAAGTTTGGTTTAGTGTTTATATGTGTGCCACTGGTGGAAGGAAACTTGACACATGGAAAACCACCGCTTGTTAAACTGCCTGGTGTGTCACTGGGATATTCTTTACTCCATTCTGTGGTGGACTTTGTTGGCAACTGGACTTCTAATGAGCAGTTGCAGTCTAAAGTGAATGAACTGTACAGGTTTCTGTGTGTAGCGGCACCATTTGGTACTCCCGTTGATACAAACTTTACAACAATTCAATCATTCATCAACAGTAAAGACATTATTGTACCTCAAAAAGGAAAGCAACCTGCATGGAAGCCTGTTCAGTACAAAGGAAAACAACAGCTTGTGTTTACTGTTAAAGAGGAGATCAGAGCTGTCCAGcaCGTTAAAAAGGAATTTCAAGACGAGCGACAACTCTTTGGCATCATCTTGTGCCGGgctgACTTGGAGGGAATACCAGAAATCACAGTAAACATCACGTCATCATGCCTGGATTTCCTTGTGGTCCACCCCTGTGTTCTGGAGGGCGACACTCATGTCCAGATCCCTTCGTTTCAACCGTCACAAATGCTCAAAGGACCTGAGATGGTGGGAAGGAAAGTCAGATTCAGGCCACCAACAGAGTCATTCCATCTGTGCCACTACTCTTCTAAGACTCCTTATGGCTTGCCTGTCCGAGGAATATACCAAATGCAGGGTGACGCGAATTCTGTACAGGTTTCTATACAGTTGAAACTAAATGAAAAGGTCAAGAATTCGTTTGAGTATTGTGAGGTTCATCTCCCTTTCTTTCACAGAGGTCCCGTGGTGCGAGTGGATTCCGCTGGTCCATCGACTGGTGGCATTTTACTGTCGCCTGATAAAAGACGCCTGGTGTGGGATATAGGCCAGAAGTTCCCCAACAAAACCCTTGAAGCGTCGCTGAATGCGACCGTGCACTTTGGAGAGAAGAAACAACAGACCACGGCGGACAATGAGCCAACTAGTTTTATAGAGGATCCTTTATGTACAGGGATCAACACTTATGCGCAGGTATTTTTCAAGATCCCGGATTTCACTTTCTCAGAATGTGCCATCGATCCCAGATCACTGGTCGTCTTTCCAAGCGGGAAGTACAAATTGAATATATcgtaCGAGTTCTTGTCAGCAGACTACAAGATATGGAACACCAATGGAGAGGCGTTGTTTGCATTCCCTCCTCCGAAATTAACCCACAGTGATTAGAACACAAtactttttgttttctaaattttACTTCCGAACTCCTGTTTCCATTTATAGAAAAAAGATtccattacatgtacatatttattAAGTGACATTTACATTATaaaataccctggtcccagaggctttcttgtattctttattggcaaattttgcgacgcgaaccgcttcttttaattgtttttattggcacgaagcgctgagagccgagaaaagaaagcctctggtcaagaccgttgggaacctcactttcatgccatcagcttttgaccgtcgttttttgattggaggatatttttgattgctctgcgagtcatatgattggatggattaaatatctttggggaatTTACCTTTacgggtaggtgtggagaacttttgctttatcaacggattttcttaccagggaaggataaggttttcgttgtaagtctcgccgatcgtgatagtcgatgggttttatctctaagagtattttcgaagacattttgtcgttagttcttgaaaaccgttcccgtgacagagcagctgatccacaacatgatgctttgtttgaaattcggaatcgagaggacgtcttcgccatcttaaccgactggccatggaaaatccatcatattccagtgccttccagatctttgccgagtgtaggcgccagaatttgttacatttattcgtgtatttattcgtgtttggtgtttaatttcgcgtaattagtttcctctgttctgtggcctttattcatttgcatactctataagttcggtccgcgtgtaattctttggaaaacaaaacacccgcggaaacgtttccaaaatatccgtcagtcttgcgtgttatcgacagatccgatcgaaatccaccaatcacagccactagtgtgaccttctgaccttctttacgtcatgctag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H0R1	AP-5 complex subunit mu-1 OS=Homo sapiens OX=9606 GN=AP5M1 PE=1 SV=2
Q5E9X5	AP-5 complex subunit mu-1 OS=Bos taurus OX=9913 GN=AP5M1 PE=2 SV=1
Q4R6Q7	AP-5 complex subunit mu-1 OS=Macaca fascicularis OX=9541 GN=AP5M1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004207 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039591 all species →	Family	AP-5 complex subunit mu-1	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16082 all species →	AP-5 COMPLEX SUBUNIT MU-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0030119 all species →	Cellular Component	AP-type membrane coat adaptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19023	AP5M1, MUDENG; AP-5 complex subunit mu-1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.