Gene detail

Detailed information of ENSOFVP00000025641.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: CAH3145245.1, unnamed protein product [Pocillopora meandrina]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000027695

ATGGCGGCGATGGCGGCAAAATCAGCCGTTTTTGCGCCCTTTCGGCAAAAGTGATCTATATATATCAGATTCTCAAAACTGGCTTAAAAACCCATCTTGGATCTAGTTCCAGAACCTAATCAGtttttcagttttttctgCAAAGAACTACCCAATCATCAGAATGAGTGAGGCAAACGAGAAAAAAACAAGAGACGGAAAGTACGATGACAGACCAATGTGCAAGTATGGAGCTGATTGTTATCGTAAGAATCCTGCTCATTTTGCGGAATATCGACATCCAGACTACGACTCTGAAACTGATGACGATAATGATGAGACAGAGAACTCTCCTCCAGCCAAGCGACAGAAGCTAGATGTTAGAGAAGAGTCAATTGGGTCATCTGCAACATCATCCTGTAAAAATACGGATTACAAGGATGAAAGTTGTTTGCCGTTTTTGTTGACCAGAGTGCGAGGAATTCCTTCAGAATTCAATGCCAGAAATTTAGCTATTGGCATTAAAGAAATTCTTTCAAATGACATGGGTGACCTGAAAGCCTCTGCACAGTTTAACTACATGTTTGATATCTCTTGGTTGATTGAGCAGTATCCTGAAGATAAAAGGTCCAAACCTTTGCTTATTGTTCATGGAAATCAGAGAGAAGCAAAAGCTGAACTTCAAAGAGAGGCTGAACCATATCCAAATATCCAACTGTTTGGCGCCAGGTTAGAAGCATTTGGAACACACCATAGCAAAATGATGCTATTGTTGTATAAAGAAGGTATTAAAGTTGTCATTACTACAGCTAATCTGATTGCCATGGACTGGGACCAAAAAACTCAAGGGGTTTGGATGAGTCCATTGTTTCCAAAACTTTCAAAGGAGTCAGCATCACAGTCCAAAAGTTCTTCACCAACTAATTTCAAAGAGGATTTATTGGATTATCTAGCAGCATATGGAGGCACAGCACTGGATGAGTGGAAACAACACATCTGTGAACATGACATGTCCTCTGCAAGggtTCGTTTGATAGCTTCAGTTCCGGGTCGTCATACGGGACTCAATAAAACCAAGTGGGGCCATCTTAAATTGCGTAAGTTGCTTCACCAGCACGGTCCTAGCTCAGGTGACGTCAGCTCGAAGTGGcccgtgattggtcagttttctAGCATTGGGTCTCTTGGCAATGACAAAGATCGGTGGCTATGTGCTGAGTGGTTACAAAGCTTGGCTACTTGTTCTGGTAACATGATGTCGAGGCCCGCTCTGCATCTGGTTTTTCCCACGGTGGATAATGTTCGGCAGAGTTTGGAAGGCTATCCAGCCGGTGGTTCGTTGCCGTACAGCTCCAAAACAGCAGTGAAACAGCCTTACCTTACAAGTTTCTTTTGCTCATGGAAATCTCGCAGCTGTGGTAGAAGTCGCGCCTCTCCGCATATTAAGACTTATACCAGGATATCCCCTGACTGGAACCATCTAGCTTGGTTTCTTATGACAAGtgCTAATTTGTCAAAAGCAGCTTGGGGCACACTCGAGAAGAACGGTCAGCAGCTGATGATACGCTCGTACGAGATCGGCGTTTTGTTTCTACCAAAGGACCAGGAGCCTGGCAGCAAATACTTCCACGTGAAAggaaaagaacaaaacaaagaaatttcGTCAAGTTTTAGTGTACAGCTTCCATTCGATGTGCCACCTTCACCTTACAACAAAGGCGAAAACCCTTGGATGTGGGACGTCAAGTATGGCACTCCGGATTGTCACGGGAGAATTTGGTCACCGTCTTAACGGCTCGAGCAATTATAAGACACGATGAGAAATTCGGAGCTCAAGTTGAGAGGAAAAAGGTTGCTAATCCAATGTGGAGGACTTTGGGCGTGTTCTAAATTGTGAATCGTCCTTTGTTTGGACGAAAGTTGAAGACTGTCAGtaactgtgaaaacttcatAAAGAGTTTACTTGACTTGACAGAGCATTTTGTATTTTGCGAGCGTTTTTCCCACGTACTTTACTTCGCCGAGTCATTTTCCattgcccccccccctcccccctcccccctccccccttcttcATGCCCAAGGTACCATATAACAGGACCATTCTGAGTAGATCGCTTGCGCAATTTATCTCCGGGTTAAGAGTGCCTTGTAGGCACAAGGACGGTTACTAGGGAAAAAGAGAGTTACAGGGTGGGTAGAGGTGGGAGATGGTATCGGAAATGCAACGTAAGTGACAGTATTACGGGACCTGTTCAAAAGATTGCTGTTCTGATTGGGCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BJ37	Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus OX=10090 GN=Tdp1 PE=1 SV=2
Q4G056	Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus OX=10116 GN=Tdp1 PE=1 SV=1
Q9NUW8	Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens OX=9606 GN=TDP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003551 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10283 all species →	zf-CCHH	PBZ domain	Domain	Interproscan
PF06087 all species →	Tyr-DNA_phospho	Tyrosyl-DNA phosphodiesterase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019406 all species →	Domain	Aprataxin and PNK-like factor, PBZ domain	Interproscan
IPR010347 all species →	Family	Tyrosyl-DNA phosphodiesterase I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12415 all species →	TYROSYL-DNA PHOSPHODIESTERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0017005 all species →	Molecular Function	3'-tyrosyl-DNA phosphodiesterase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10862	TDP1; tyrosyl-DNA phosphodiesterase 1	EC:3.1.4.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.