Gene detail

Detailed information of ENSOFVP00000025845.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_022792811.1, RNA-binding protein 34-like [Stylophora pistillata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000027899

AGACCAAAAAGACAGATGAGGAAACCGAACAGGAAAATAGTCCCCAGGAAGATCCCaaggaaaataggaaacaaATGGAAGCAAACATGAAGGAATTTTGTTTCCAtgcaagaaaaaggaaagaacCAACAAGTGATGATGAAGATCAAGGCATCGTAGTCAAGAAGTCTAgattgaaaaaaaggaaatctAATGAAGTTGAAGAGGATCCAGGGAGACTTGCCAGGACAATCTTTGTTGGAAATCTTCCAGTGGTATTTACCAGAAAAaagTTGAAACAGTTGTTTTCCGTTTATGGTGATGTGGAGAGTGTACGATTTCGATCAGCAGCACTAGCAAAACCAGATTTGTCAAGGAAAGTGGCCATGAAAAAGAGAGAGTTTCATTCAGACAGACACAATATCAATGGTTATGTTGTCTTCAAAGAGAAGGAATGTGCGGTCAAATCATTAAACAGCAATGGCATGGAGGTTGATGGTTTTCATATCAGAGTTGATTTAACTGGGCAAAACAAGAAGcACGATCATACCAGGTCAATCTTTGTCGGAAATTTACCTTTTGATACGGAAGAGGAACCCTTGAGACAAGTCTTTGTTGAATGTGGAGATGTAGAAGATGTCCGTATTGTAAGAGACAGTAGAACAGGTGCTGGCAAGGGGTTTGGCTTTATTCGTTTTAAGGAAAGAGATGCAGTGATGTTTGCTTTACAAAGGAACAAAACAGAATTCCACGGTCGACAGTTACGAGTCTTTCCATCTTCAGAAAATCCACAACTAGGTCAGTTTAAAAGAGCCAAGAAAGGTAGACCTGGATTGCATTCATTCAGTGGAATAACtgccaaaaaaacaacaacaaattaccaCAAAGGAAAAAAGAAGCAAGTAGTTATAAAAAGGCATCAAGATAATCAGGGCTGTGGAAGAATGTCTGCGAGGAACAACTACAAGCTGAGCAGCAAGAAACCAAAATTTGAAAACCGTGGGAACAGTAAAATTTATcatcacaaaaataaaatcaggACAAGTACAATGTCAAAGCAAAATAAGAAAAGGAGCAAAAAAGAAACTATGGGAactaaaaattaattttctaCTTTTGTCTGTTATGAGTTTTATATGTAGATTATGATTGTTGCTCATGTCTACATTATTTGATAAATCATATCTGAATTATCTTCAGCCTAATTAGTTTCaattattttgcaaaacatttttcatgtgTTGAGAATGATATACCTGCCAACTGTTCTGTGTCACAGGTGTAAGATTTTGATCCTGGGAGGGCCAAGGTGTTTTTTACCAGGCTACATTCAACAAAGACAGCTTGGAACTGATCAAATTATTTACCAGCTGGTATCCTGCTAGTAACTGGGCATTAATTGCAGATCTTTTATATTGATTGCAGTATACACAAGCAAAAATGAATAGTGGCTCTCTTTCTGTGCTGGATTTACCTTTTTCACATTAATTCGCTCAGTTACAAGATCAAATAATCAAGTAAACAGTGTATGCAGCAACACTttaagtttttaaaatgttcGTGGGGAATATAGCCAAAACCACCCTTGCCCAGCTTCCCATCCCTGTAGAGAGGAAACAACTATCTAGTGTTAGATTCTCACTCTTTGGGTAATATCAACTTGAGAGAACTAGCTGTTATACTTTAAGCAATCATAgttaaaaacagttttgttaTTAAGCAGTGGTTGatgtttcatcatcatcatctttattttttttcacattataattaggaaataaacattttacagTACATTTTTAGTTTGTGTTCAACTGATCCAGAGGTTTGAAGTTTAAAGAATAATCCTTCTTAATAATAAATCTTGTTTGAAAACTAGGCATTTTGTTtctgcttttttcttttctgacaACATATTTGTCTTTGCAAAGCCTGATTGGAGAATTTGAAATTTTGAGATGGTGCATTTCCAAAAGGTAGCAGTGCAGAATTTAGAGATAATATTTGCTTCCAACATCACCCTTTTACTAGACTGTTAACATTATAAGAATGTCCAGTACAGTATGACAGATTGGTCGTTGTTATAAAGAATGTGCTTAGGAAGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O13741	Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop12 PE=1 SV=1
Q6BTS9	Nucleolar protein 12 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=NOP12 PE=3 SV=2
Q6FUS6	Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=NOP12 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006909 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034221 all species →	Domain	RBM34, RNA recognition motif 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23236 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14837	NOP12; nucleolar protein 12	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.