Gene detail

Detailed information of ENSOFVP00000026171.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020623054.1, zygotic DNA replication licensing factor mcm6-A-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000028230

tgTGGAAATAATCCTAAGAGCTGAAGCAGTTGAACAAGCTCAAGCTGGAGATAAGTGTGACTTTACTGGAACGCTGATTGTTGTTCCTGATGTGGCACAGCTTTCTACACCAGTTTGGTGGCAAAGATCTTGATGGTGATGATGTCACAGCAGAGACAATCAAAAAACAGATGACAGACCAGGAGTGGCAAAAGATCTATCAAATGAGCAAAGATAAGAATCTTTATCAAAACTTGATCAACAGCATATTCCCTACAATTCATGGAAATGATGAGGTCAAACGTGGTGTGCTTCTTATGTTGTTTGGTGGAGTTCCAAAAGTCACAACCGAAAAAACCAACCTTAGAGGGGACATCAATGTCTGTATTGTTGGAGATCCCAGCACAGCTAAGAGTCAAATACTCAAGCACATAGAAGAGTTTAGTGTCAGGGCAGTGTATACTTCTGGGAAAGCTTCTAGTGCTGCTGGTCTCACAGCCGCTGTTGTCAAGGATGAAGAGTCATCAGAGTTCGTCATCGAAGCTGGAGCTTTgatgttggctgataatGGTGTATGTTGCATTGATGAATTTGACAAGATGGATCCCAAGGATCAGGTTGCCATTCATGAAGCTATGGAGCAGCAAACTATTTCAATAACTAAGGCTGGAGTGAAGGCTTCACTGAATGCTCGGACATCCATTCTAGCTGCAGCAAACCCAATTGGTGGTCGATACGACAGAACAAAATCACTTAAGCACAATCTCAACATGTCAGCTCCCATCATGTCCAGATTTGATCTTTTCTTCATCCTTGTAGATGATTGCAATGAGGTAACAGATTATGCTATTGCACGGAGAATAGTTGATCTACACAGCAGGCTTGGAGAAGCTGTGGAAAGGATTTATAGTGTGGATGAGGTGCAAAGGTACATAACATTTGCCAGGCAGTTCAAGCCCACAATAAGCAAAGATGCTCAGGATTTTATTGTTGAGCAGTATAAACATCTGAGGGAAAGGGACACAAGTGTGGCAAGGTCTGCTTGGCGTATCACAGTGCGACAGTTGGAGAGTATGATCCGTCTCTCGGAGGGTATGGCCAGGCTCTACTGCCAGGATGAGGTGCAACCAAAACATGTCAAAGAAGCATTTCGTCTTTTGAACAAGTCTATTATCAGGGTGGAAACTCCAGACGTACAgtttgatgatgatgaagacgaGGAGCCACAAGAAGaTATGGATGTAGATGCAGAAAGTGACACCCACCCAAGTGGCATGGTGAATGGTCACACAGACACAGACACTACCAAGACAGACAGTGATCAGAAGAGTAAATCCAAACTGCGCTTGTCATTTGAAGAGTACAGGTCAATGGCAAGAACTATTGCTGGACATCTAAGGGCTGAGGAGTACAGAGCTGGTGATGATGATGCTGGTTTACGAAGAAGTGACATTGTGAACTGGTATCTCACAACAATTTTGAAAGACATTGAAACAGAGGAAGAGTTAGCCGAGAAGAAAATTATTGTAGATAAAGTACTGGACAGACTTATCACCCATGATAATGTTATTTTGGCATTGAAGGAATGGGGCGTGGCAGAGGAAGATTATGTGCCCTCAGATGAGGACGACCCTTTCCTCGTGGTCCATCCAAATGTTGTGGTTGATGATTTGTAAAAAGAGAGAATTCAGTAACCAACACTAATTCGCTGATACTGTACATAAAATAAAACTTGGATTTGTTCCGAAACTGAGTTCAAAttcaaatcaaagttcaagaTCAATGACGAACCTTTTTACGTGTTTAGGGAATTGCTTTTGTGTAAGACCAAAAAGAGCAAactaaacaaatgaaaaaacttATGGTTTCCTCAGTCCAGCATTATGAATGTTAGCATTACAGAACTCTAACACTGTCAACTAATGGAAAAAGCTGGTGGCTGGTTGTGAAATTAAGTGCAATTCCCAGCTGTACCTTAATGTAGACTCCATTACTTGTTATGCTTTTTACAACTCAGGTTAAAGGTGTGAAGAATGATTTGTATACTTAGCGCttaataaaaatattatttctcATCACTTTTGTTGTTATATTTTAAATGTAAAATTAGTTTGATAAATTTGGTTCTGTTGACCAGTGATATTAAGGTTATGGACACCGAAATACCAATTTTTTCAAATCCCTCAGGGAAACCAAAATTGGATTGAAAAATCCAGTAGTTTGAGAATCAGGTAAAATAGACCTTTTAATCAATacggtggccatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1V8	Zygotic DNA replication licensing factor mcm6 OS=Xenopus tropicalis OX=8364 GN=zmcm6 PE=2 SV=1
Q7ZY18	Zygotic DNA replication licensing factor mcm6-B OS=Xenopus laevis OX=8355 GN=zmcm6-b PE=1 SV=1
Q498J7	Zygotic DNA replication licensing factor mcm6-A OS=Xenopus laevis OX=8355 GN=zmcm6-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18263 all species →	MCM6_C	MCM6 C-terminal winged-helix domain	Domain	Interproscan
PF00493 all species →	MCM	MCM P-loop domain	Domain	Interproscan
PF17855 all species →	MCM_lid	MCM AAA-lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001208 all species →	Domain	MCM domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018525 all species →	Conserved_site	Mini-chromosome maintenance, conserved site	Interproscan
IPR041024 all species →	Domain	Mcm6, C-terminal winged-helix domain	Interproscan
IPR031327 all species →	Family	Mini-chromosome maintenance protein	Interproscan
IPR041562 all species →	Domain	MCM, AAA-lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630 all species →	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0042555 all species →	Cellular Component	MCM complex	Interproscan
GO:1902969 all species →	Biological Process	mitotic DNA replication	Interproscan
GO:1990518 all species →	Molecular Function	single-stranded 3'-5' DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000026171.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.