Gene detail

Detailed information of ENSOFVP00000026380.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020614419.1, RNA polymerase-associated protein RTF1 homolog [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000028443

ATGGGAAAACCGAAGGAAAATAGTGATTCCAAACGTAAAAGAAAACGAGTCGCAGTCGAGTCTAGTAGCGATGATGACGAGAGTGAACAAGACTTAGAGGAGGAACTGAAGTCACTCGCCAAGCGCTCTAGGCAAGCGCAGGATAATTCCAAGCCGCAGCGATCAGGAGATTCAGACAGCGACTTAGACTCTTCAGAGGGAAGTGATGATGAGTGGACTATGGATTCTGAAAATAGCAAAGGCAAAGCTGCTAAAGctaaggaaaagaaaaaaggtgCTAAGAAGGCTTCATCATCTGGTTCTTCATCAGAAGAAAGTGGTGAAACGTCATCTGGTGAGtcctcatcatcgtcatcatcctcagaagatgaagaagatgaaCAGTATCACGATGGCTGGGATGATAACTTGATGGGAGATGAAGCTGACAGGGAAAGACTGGAAAGAATGACAGAAAAAGAGCGAGAACAAGAAATATTCAATCGCGTTGAGAAAAGAGAAGCTCTGAAAACTAGATTTGAAATCGAAAGGAAACTACGGCTGGctaagagaaaagaaaagaaaaagaagcgcgaaaaagaaaaagcaaatCTTGAGAAAGAGGGTATCGCTCTGAGGAAAAAAGAGCGAAAAAGGCATGTTGAGGAGAAGAAGGCCAAGGCGCTGGACGATTTAAAAGCCAAAAGATCAGAGAAGAAGGAAAGAAAAGTTGCAGAATCATTGGCAGAACAGAAAGAGCCACAGTTGAAAGCTAGTGATGTATTTAcagatgatgaggatgatgatgaacAAGAGGAAAGTAAATCAAGTTCAGGGGAAGGATCATTCAGAGAGTCTGAAGAAGATCAAGGTGATGAGGAGCCTCAAAGAGTAGCATCAGTGGATGATCTGGAAAGAATAAGAGTATCACGGCACAAACTTGAAAGATGGGTACACATGCCATTCTTTGGCAAGATTGTAGCTGGATGTTACGTTCGTGTTGGTATTGGAAGTCATGATGCGCGTCCTGTTTATAGGGTTGCTGAGATAAGAGATGTGGTGGAAACAGCCAAAGTGTATTCTCTAGGAACTACAAAAACCAATAAAGGATTAAAATTGAAACATGGCAATCAGGAAAGAGTCTTTCGACTGGAGTTTGTATCCAATCAGAGATTTACAGAAACAGAATTTATTAGGTGGAGAGAAGAGTGTGAATCTCATGGCATTCCTCTACCTACACTTGATGAGGTGGACACGAAGGCCTCACAATTTAATGAAGCTCGATATTATATGTACAACGAGGATGATGTCGACAAGATTGTAGCAGAGAAGCAGAAGTTTAGAAAAACGCCATTTAATTATGCTCAGAAGAAGAATAATTTAATTCGATCAAAGGAAGTAGCAGAACAAACTGGGAATGTGGAAGAAGCAGAAAAAATTCGCGGTGAGCTGGAGGATTTGGAAGAGAAAGCCCAGCATCTGGACAAAGTGCGATCAAAGAACCTAAGTGCTATCAGTTACATCAATGAGCGGAACAGAAAGAGGAATATTGTTGAGGCAGAGAAAGCTGCAGCAGAAGAAATGATGAACGAGGAGCAAAAAGCTGATCCATTTACAAGACGAAAAACACTTCCTCAGCTTGTGTCTATGgtgAAGAACGCCCCAAGTCCTGGAACGAGAACTCTCGcggaaaacgaagaaaatattGAGGTAGCACCGTCATCTTCAAGTTCACAACTCACCATCACTGACGGAGCTTCCTCCTCAAGTCAACCAACGGAAACAGCTGTCTCAGACATAGATAGACTGTTGCAAGTACCAGAAGCCGCAGCTGGAGCACAGGTTCTTGAAAGAAAACCTTCGCAGTCAGAAGATCTATTTTCCGCCCACAACTTCGACATCACTATCAACCTCGACATCCCCGCCCCTGGAACAGAATCCCGTCCAGCGGTAGCAACTCCAAGACCTGCAAATAACGAGAGAGACGGGGCACCAAGACGATCACTAAACCTTGAAGACTACAAGAAACGAAGGGGGCTGATTTGA

Transcript

ENSOFVT00000028443

GTTCTCGAGCACAAGATGGGAAAACCGAAGGAAAATAGTGATTCCAAACGTAAAAGAAAACGAGTCGCAGTCGAGTCTAGTAGCGATGATGACGAGAGTGAACAAGACTTAGAGGAGGAACTGAAGTCACTCGCCAAGCGCTCTAGGCAAGCGCAGGATAATTCCAAGCCGCAGCGATCAGGAGATTCAGACAGCGACTTAGACTCTTCAGAGGGAAGTGATGATGAGTGGACTATGGATTCTGAAAATAGCAAAGGCAAAGCTGCTAAAGctaaggaaaagaaaaaaggtgCTAAGAAGGCTTCATCATCTGGTTCTTCATCAGAAGAAAGTGGTGAAACGTCATCTGGTGAGtcctcatcatcgtcatcatcctcagaagatgaagaagatgaaCAGTATCACGATGGCTGGGATGATAACTTGATGGGAGATGAAGCTGACAGGGAAAGACTGGAAAGAATGACAGAAAAAGAGCGAGAACAAGAAATATTCAATCGCGTTGAGAAAAGAGAAGCTCTGAAAACTAGATTTGAAATCGAAAGGAAACTACGGCTGGctaagagaaaagaaaagaaaaagaagcgcgaaaaagaaaaagcaaatCTTGAGAAAGAGGGTATCGCTCTGAGGAAAAAAGAGCGAAAAAGGCATGTTGAGGAGAAGAAGGCCAAGGCGCTGGACGATTTAAAAGCCAAAAGATCAGAGAAGAAGGAAAGAAAAGTTGCAGAATCATTGGCAGAACAGAAAGAGCCACAGTTGAAAGCTAGTGATGTATTTAcagatgatgaggatgatgatgaacAAGAGGAAAGTAAATCAAGTTCAGGGGAAGGATCATTCAGAGAGTCTGAAGAAGATCAAGGTGATGAGGAGCCTCAAAGAGTAGCATCAGTGGATGATCTGGAAAGAATAAGAGTATCACGGCACAAACTTGAAAGATGGGTACACATGCCATTCTTTGGCAAGATTGTAGCTGGATGTTACGTTCGTGTTGGTATTGGAAGTCATGATGCGCGTCCTGTTTATAGGGTTGCTGAGATAAGAGATGTGGTGGAAACAGCCAAAGTGTATTCTCTAGGAACTACAAAAACCAATAAAGGATTAAAATTGAAACATGGCAATCAGGAAAGAGTCTTTCGACTGGAGTTTGTATCCAATCAGAGATTTACAGAAACAGAATTTATTAGGTGGAGAGAAGAGTGTGAATCTCATGGCATTCCTCTACCTACACTTGATGAGGTGGACACGAAGGCCTCACAATTTAATGAAGCTCGATATTATATGTACAACGAGGATGATGTCGACAAGATTGTAGCAGAGAAGCAGAAGTTTAGAAAAACGCCATTTAATTATGCTCAGAAGAAGAATAATTTAATTCGATCAAAGGAAGTAGCAGAACAAACTGGGAATGTGGAAGAAGCAGAAAAAATTCGCGGTGAGCTGGAGGATTTGGAAGAGAAAGCCCAGCATCTGGACAAAGTGCGATCAAAGAACCTAAGTGCTATCAGTTACATCAATGAGCGGAACAGAAAGAGGAATATTGTTGAGGCAGAGAAAGCTGCAGCAGAAGAAATGATGAACGAGGAGCAAAAAGCTGATCCATTTACAAGACGAAAAACACTTCCTCAGCTTGTGTCTATGgtgAAGAACGCCCCAAGTCCTGGAACGAGAACTCTCGcggaaaacgaagaaaatattGAGGTAGCACCGTCATCTTCAAGTTCACAACTCACCATCACTGACGGAGCTTCCTCCTCAAGTCAACCAACGGAAACAGCTGTCTCAGACATAGATAGACTGTTGCAAGTACCAGAAGCCGCAGCTGGAGCACAGGTTCTTGAAAGAAAACCTTCGCAGTCAGAAGATCTATTTTCCGCCCACAACTTCGACATCACTATCAACCTCGACATCCCCGCCCCTGGAACAGAATCCCGTCCAGCGGTAGCAACTCCAAGACCTGCAAATAACGAGAGAGACGGGGCACCAAGACGATCACTAAACCTTGAAGACTACAAGAAACGAAGGGGGCTGATTTGAATTACGTGAAAGTTAGACTGGACTTTGGTCGAAAACGCTGCGTCGACTCGAGTTAGATCACGTAAAAGGGGACAAAACTTTGTGTGTATTCATGTTTCTTAGAACAAAGCAAAcattctcggtatttatctGATTCGTTAGCTTTTATGCATGTTTTGAAATGTGAGGCGAAGTTACAATTTTAAGAGTTTGGCCGTGAATGCGTGCTGTTTGATCAAGGGAGTAGGCCGCCCAGTAACAGAACACCCCGCAAATACTTTGTTGTTGGCAGAATTCTTGTGGTCCAACAGTTACTGCcttgcgtagcttggcggtttaaacAATTTGAACGCGCTAACCTAGCGTCAAAGCACTTCAAATGAGCTACGTAGGGTAAACAGTTACAGTATACTGTTAACACTGTCGGAAAACCGAAAAAGCTTTTGATCAATTACAGCAAACGCAGATAAcgcaattaaccaatcagagctcaaGGAAAGCAGCCCGTattaagcgcgggaaaacgcgtgtgCATCAAGTCACGTGTGGTGTTGGTTCTGTTCCAGATTGGTCGAGCACGTTGCACGATAATTCTTTTTAACTAATTACAGAGCAAGCACGTGATTACgtaacaaaaataaacagttgGAAACCGCACTTTAAAGGGATATAACCGTGCAGGTGATTCTGTGGAATTCACGGAAGCTTTACTGAAGATTTATTCCAAGTGCTGCTTTTAATCTTGCCCAAGAGTGCGCCATTTTACCTTTTTAGACATTTCTAGTCATCATTGCCTAAAATCTGAGTCTGATGTTGCTCCTTCAAGCCGCGAAATATTGATGTGTTGTCTGACAGATTGGAGTGGATATAAGCAAGCTACTTGCAACTTATGATCAGGGCACCAAATTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92541	RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 PE=1 SV=4
A2AQ19	RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 PE=1 SV=1
Q5RAD5	RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=9601 GN=RTF1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005447 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03126 all species →	Plus-3	Plus-3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004343 all species →	Domain	Plus-3 domain	Interproscan
IPR036128 all species →	Homologous_superfamily	Plus3-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13115 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:1990269 all species →	Molecular Function	RNA polymerase II C-terminal domain phosphoserine binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15178	RTF1; RNA polymerase-associated protein RTF1	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.