Gene detail

Detailed information of ENSOFVP00000026402.1 in Cyphastrea salae

Genomic Location: chr5:9461673...9465790
NR annotation: XP_020604324.1, maltase A2-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOFVT00000028466

TTGACTGAAGAGTCCTGAACAGTTCATTTTGCCTGTTCAAGTGAGCAGTCCGTCGCAAGATGTCTAACGAAGTGGAATTTAACAGTTTAACCAAAGATGATGTTAAAATCAGGTTCGAGGATCCCTCTGGTATTCCGTCGCAACCAACGCAGGAAGAAGTCGCGAAACACAGAAAAACACGCTTGATCCTCGTGGTGTTGTTCGCCATTGCCGTTGTTGCGATGGTGGTAGTAGCggtcattattattatcgtgGCTCCACAGTGTGAAAAGGCAGACAAAGTGACTGAGAAAAGCAATGCTACAGGCAATGCTACACTCAAGGGCAACGATACGATAGTCGAGAATTGGTGGAAAAACGCCGTCATTTACCAAGTGTACCCGTTGTCTTTCAAGGATTCAGATGGCGATGGATTTGGCGATTTGAAAGGCATTGCTGAAGAGATGGATTACTTGGTTGAACTGGGAGTTCATGCCCTTGGATTAAGCCCGATCTACCAGTCTCCAATGGCTGATGCTGCCGCTGGCTACGATATTTCCAATCACACCGCCATCGACAAGAAGTTCGGAACCATGGAGGACTTTGAAGATTTTCTTAAAGGGGCTCACGAGAAAGGATTCAAGATCATAATGGAGTTCGTTCCAAACCACTCTTCAAATGAGCATCCTTGGTTCGAAGGAAGTAAGAAGTCAAAAGACAACAAGTTCAGAAACTATTACATTTGGCGTGACGGGGCTGGGGCCGCAAAGGACCAACCACCAAACAACTGGATCAGTGTGTTTGGTGGAAGCGCGTGGACCTACgacaacacaacaaaacagtACTACCTTCATCAGTTTCACAAAGAGCAGCCTGATCTAAATTTGAGAAACGACGAAGTCAAAGAAGAACTGAAGAAAGTTCTGAGGTTCTGGCTTGATAAAGGAGTCGATGGATTTAGGGTGAACGCGGCGCAGTTCCTGCTCGAATCCGACAGTTTTGAAAATGAGACCGAAAGGAGCAACTACAACGCGTCTGATCTCGCATACGACATGCTGGATCACACACTCACATACGatcTTGATGGCAATCATGACATCTTAAGTGAATTCCAGAAAGTTCTAGATGAGTATGATAGCCATCCCATTCTGGTTGCTGAGGTAATGGGACCCTATGCTAAAACCTCTAAGTTTTATGGCATGTTGGACATCCCCATCAACTTTGGTTTGATCAACAAAGTAGACAGACAAGGCATGACACTAGCGCAAGGCATAAATAAGACTGTGGAGGAATACTTGGCAAGTGTCCCTAAAGGAAAGACACCCAACTGGGTCATTGGTGATCACAATAATGCACGTGTAGGCAGCCGATTGGGTGAAGACAACAGATATGCAATGAATACCCTTGCACTTACCTTGCCTGGAGTGGCGATGACCTACTACGGTGAAGAGATTGGCATGTTAGATGGTAGCACACCCAATCCAAAGGACAAAGAGAGAACTCCCATGCAGTGGAACACGGAAGCATATGCTGGTTTCAGCACAGCTAAACCATGGTTGAATGTTTCTTCAGACTATCGTACCATAAATGTGGACACAGAAAAGGGTGACAGTGAATCATACTTGAACAAATACAAAGAACTTGTTAGGCTAAGGAATAACACTGCCTTTGTCAGTGGTGAATTTAAGTTTGTTCATGTTGATACTCAGGTGTTTTCCTATGTTCGCAACCATGAGGATGAATATTTCCTTGTTGTTATCAACTTTAGCGACAAGATTTGGGATGGTGATCTTGAGAAGCTGTCTGGCTTAGGCACTGTGGTGTACGATACTCAGTCAAAGCTGGCTGGTAAAGGAAAGGTAGATGTgaataagcttaagcttaatgtGGGCCAGGCTGTTATTTTGAAAAATGGAGACGAGAAGTGGCACATGTCTTAGGAATTTTCTACAATGTTGCTCAATAACACAGTTTTCCAAGTTAATTTATCCATATTTGAAATCATGCTATTGCATTATGCTAATTAACAAGGACATGTTTTCTTTTGGTGGTCATTCATGTTAATTGGAGTTCAAGCTTCCAAAGCAGACTACAACATCTTCAGTTGATATTTTGTAATCAAATCCAAAGCTACAACGTAtcatattattttattttcttctagTGTATTGTATTTTTTGAGGATGTTGTATTTTGTTCCTCATTATTGCTGCTTGTTAGCGAACCCTTTCAGTTAGTAATGCATTAGCATGCAAAAAAAGCGATAAAATGGAATGACATTTCCAAGTCATTATCGTGCTGTTATCAACTGAAGTTTATTTTAATCATTTACAAGCTGATAATAGCATCATAACAACTCCAAACTGGCGTTCCATTTTTATTTCACATTTTAACATGACTATTAATAACTCCTGAAATTctgtattattttttaaattattagcATTCACATTCATAAGGTGTAGTATGCTGTCATTGATGTAATAGATCTGTATTTAAGTTAATACTAGTTAACTCGGGGAGAGGAGCTGGCCAAATGGtcatttcattagcctgtaagCTTTGAGCAGTGTCATATTTTTCTTGTGTTGTGTTGACAGGAAAAACACGCTCACCCCACAGTGTCTCGTCTCCTGCTGGGTGTGTGTATATAAACAAAATGGgtattgaacagaaaaaaaggCTGGTGAGTGGAGTGGAGGAACCTTTGTTGGTAGACTTGCTAATACTCTAGGATTGCTTCATACTACAAAAATGTGTACCCATGCAAAGACAGTTTTTTTGGCATAGTTAAGCCTTTAACATGGCTTATATCTACCCTCTACAATTACATGGGGActaaaagaatttttttcactaaaaatttacaatttctcGGAAAACATTCAGTGATTTGTCAACAAACTTTGGCAAGTCTACCAACAAAGTTTTTTAACTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64319	Amino acid transporter heavy chain SLC3A1 OS=Rattus norvegicus OX=10116 GN=Slc3a1 PE=1 SV=1
Q17058	Alpha-glucosidase OS=Apis mellifera OX=7460 PE=1 SV=1
Q95WY5	Alpha-glucosidase OS=Culex pipiens OX=7175 GN=CPM1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003162 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16028 all species →	SLC3A2_N	Solute carrier family 3 member 2 N-terminus	Family	Interproscan
PF00128 all species →	Alpha-amylase	Alpha amylase, catalytic domain	Domain	Interproscan
PF16657 all species →	Malt_amylase_C	Maltogenic Amylase, C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031984 all species →	Domain	Solute carrier family 3 member 2, N-terminal domain	Interproscan
IPR045857 all species →	Homologous_superfamily	Oligo-1,6-glucosidase, domain 2	Interproscan
IPR006047 all species →	Domain	Glycosyl hydrolase, family 13, catalytic domain	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR032091 all species →	Domain	Maltogenic Amylase, C-terminal	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10357 all species →	ALPHA-AMYLASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01187	malZ; alpha-glucosidase	EC:3.2.1.20	Starch and sucrose metabolism	ko00500	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cyphastrea salae tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cyphastrea salae, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →