Gene detail

Detailed information of ENSOFVP00000026643.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: KAJ7391341.1, pre-mRNA-splicing factor syf2 [Desmophyllum pertusum]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D198	Pre-mRNA-splicing factor SYF2 OS=Mus musculus OX=10090 GN=Syf2 PE=2 SV=1
Q4QRB2	Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus OX=10116 GN=Syf2 PE=2 SV=1
Q28G05	Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis OX=8364 GN=syf2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007481 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08231 all species →	SYF2	SYF2 splicing factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013260 all species →	Family	mRNA splicing factor SYF2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13264 all species →	GCIP-INTERACTING PROTEIN P29	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12868	SYF2; pre-mRNA-splicing factor SYF2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.