Gene detail

Detailed information of ENSOFVP00000027384.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020620985.1, trafficking protein particle complex subunit 10-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000029475

ATGGACTTAAAACCAAAAGTAACCTGTTATGGCGATAAAGAAGTCTCTGCCAAACTTAACCCAGAACTTGAGAAGAGACTGCCCAGGGAATACACAGAATGGAGAAGATCTTTTGGAAGAGCACCTAAGACTGTAAAGTTAAAAGCTCACTTTGTACGATTATCAGAGGGTATGCTTGTGGATGTCAGCAGTAAGGAAACATACACAACTGCGTCAAGTCTTCACAAACAACCATTCTTTCATATCTACTGGACTGACTGTCAGGATGCAGATGAATTCAAAAGTACAGTAAAAGATAGCATCACAGAGTGGATGAGAAAGTTGCGTGACAGGAATATAGTTGACTGGATGATTATTCAAGTTATATCACAAGACTCACTGAAGGGAAATAAGCCAAAAATACAGCTTCCTCGCAGCACGGTATTCGATAAGATCAAGAGTGACTTTGGTGGCAAAAATAGCGAAAGGATAATCCAGTTATGGGAACCTTTCAAAGAAAGTCAATTAACACGATCGGTGGAATCATGGCAGAACTTGGTCACTAAACTGCGGCAGTTGTTACTGCTCTCCTTCAATCGTCACTTGGGAAAGTTTGAAGACCAGGTCAGGTCACTGAGGGAGAAACGAACAGAACCACGATGGAGTTTTACAACATACTTCTTGTTGCATGAAGAATTGTCATTTGTGTTTGAGATGCTTGGCTTGTTTGAAGAAGCGCTTATTCAATATGATGAAATTGATGCTCTACTCACACAACTGGTCATCAATTCTAAATTTGGAGAGTCCCTAGACTGTATCAATGTCTTCATGCGAGACTGCGTAGGCTGTGATGGAGTTTCATTAGCTGAGAGTTCTCAAGATTTTTTGAGACAGCTAATCAAGACTGAAGAAGCAAGCTATATTGACCTGAGAAATTACTTGTTCTCCCGGCAATGCAAACTTCTTTTGAAGTTGGACCGCCGAGCTTGGGAAATTGCTCAACGAACTCTGGAATTTCTACATAATATCATTCATGAGCTGGCAATGGATAAGCTTGAGATGTCCATGCTTACTGGTGGAACTTCATGCTGCATCATCTTAACAAGCCTGGAAGTATTGAAAGCCTGCAAGAAAGAATGCTATGAGGAAGATATGGTGTACAGTCTGCACTTTGCTCTTCTCTACCAGTATGCTCGACAAAAGCTGGATCATTTGGGATCCCTGTGTGCCCTGATGCCTGATATGACACAATCTGAATCTGAACTGCAGATTGCCAACACTCTGATATCTGGGATTGGAAAAACACAAGACGAAGAGGATCTTGAGCCCGGCAATCCATCAGAGAGACTTCAAGAAGCTCTGTCGTATAGAGATAAATTTCAATCACTGTATTTGGAATTGACAAACTCAGCAATCCAAATCTTCAAAAACATTGGACGAGCCAGAGCTGCCAAGGTTCTGGGTGTGGACTTAGCTGAGTTTTACTTTTCCCGTGGAGAATTTGATCGTGCGGAGCCCCTACTGGTTGACGCATATAAGATGTACAAGCACGAGAAGTGGAGTCTCCTAGCAACACAGTGTCTGGTCAAACTGGCTCAGTGTCAAAAGCAACTCAAACACATGGACAAATATGCTGCTTCTTGCTCAATTTTGGCTTGTGAAGAGCGTCTGTCTCCTGACAACAGGTCATACTATACACAGGAGTTGTTACAAGTCATGAGAGAGACTATGGATTCAGctcAAGCTATCATTGTACGCGCTGAGCCACTTCTGAAAGTGAAAGATGTGCATATTGAGCTGATGAAGGGTATCGGCAGTGTTGGGGAGTGTATCAATGTTAAACTCAAGCTTTTTAGCGCTTTGGAGGAGGAAGTGACGTGTGGACGGATCAGTTTTAGTATCCAGACAAATGAACTTAAACGTGGAGCAAGCATTCGCTCAAGTAAACGAAACAGGGCAACATCCCCGCCGGAAATTGTGGACAGCGGTCTCTCATCGGCTGCTCTTTCAGAGGAAGACCTGTCAGATAAACCTGTCCCAGAAGGCCAGGCGGCAGAGGGAGAGGATGCTCCAAACGATGACAGAGACGAAAGACCTCGCCCACCCCTTCTTAAACCGAAGTCATTACCAGTGGTGAAAAGCGTAGAAGAGTTGAACGTGTTAGAAGAAGATGACTCAGACTGCTGCCTACAGTGCTTCAACGTCCCACTGAGACACGGAATCAATGAGTACAACCTCACTACACAGGTAGCGGAACCTGGCCAATACTTTCTGAAGCAGTTGTGTGTCGAGATTGGTCGGTTGGACTTTGTGTGGCCACAGCTGCCCCTAGCTAGAGAATCCAGAGGATTTGCGATTGTTAACGATCCTCCACGAATAACCTGGACTCGCGCACAAGACCGCCATCTCTTATCAGGACTTCCGCAGCAAGTCACCCTGAGCATTTTAGTCGAATCTGGATCCATTGCAAACGGTTCGGTACTGGAAATTACTTCACAAAACACAGCTCTCACTTTTGTACCCATACAGTCAGGAGAGGCAGTCGTACATTCATCAATGGGCAACGAGAACAGAAAGACTTTACCCTACAAAGTTCAAACCCTTACAATGCACGGCTATGATGACGTCACCGACACGTCTGTTGCTGTGGTAACCCTTCCAGCCGTCGGACCGTACGCTAAGATTGATTTCAATCTGATTCTTCATGCGTCTTTGGAGAAGCAGACTTTTCCAGAGGAAGTTACAGAATATAAGCTCATGTTCAGTTGTAAGTGGTTATCTCCTGTGGTTACCGCTGACCTGTCTTGTTCATTTCACCGTCCATTTTCCGTCCGTCACGTGCTCCACTCATCAGAAACCACCCGTTTTATTCAAGTCATTGTCAGTGGAATCAATCCAGTAGACCTGATAATTTCGTCGCCGGAGTTGATCATCAAAAACTGCTCTTCAGTGACGCTCGTATCAATGCACAATACTGCAGAATACGTGATCATAAATCACCAAGATATGTCCTTCCTTTGGAAAATCGAGAGCGAAGAAGGTAATccACAGGATGATTCACCTCACTCATCTAAGAAGAGTAACTACCTGTACGACTTTAGTGTGGTCAATACTCGGACATTATACACCATAAGTTCAAGAGTAGAGCCTTCGGGTGAATCCAGGGAACTGTACGCGGGCTCAACGTGCAAGTGGCATATTACCTTCACAAGTTTATCAGAAAAAGGAACTCCTGACACTTCACAACTGTTATACGACGTGGACTCTGATACAAACACGTGGGCTGTCAGTGGTCGGAAAAGTGGTGTCGTGAAGATACCACAGGGTGTCATGGCAACGAGTGACGTTGTACTTGATGTGATTCCGCAAACTGGCGGGAAACTAGCAATGCCAGGAATAAAACTGATGAAGTACGTCGAAAAGGACGAGAAAGCACCAGAACCGCACACCAAGGAGGACGAGGGCGCAGAGGTGAACGAGTCCGAGTCGCGGTCAAGTCACCAGTCCCCTCTGGTTTTACCGTTTTCGTGCGGTCAGGTTTATAACAAGACTATGGCAGTCCGTGTTTGCGTTTTGCCTTGCGCTAACCCTGATCTTGCCTGGATATGA

Transcript

ENSOFVT00000029475

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48553	Trafficking protein particle complex subunit 10 OS=Homo sapiens OX=9606 GN=TRAPPC10 PE=1 SV=2
Q3TLI0	Trafficking protein particle complex subunit 10 OS=Mus musculus OX=10090 GN=Trappc10 PE=1 SV=3
Q9VFB7	Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster OX=7227 GN=SIDL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003366 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11817 all species →	Foie-gras_1	Foie gras liver health family 1	Repeat	Interproscan
PF12584 all species →	TRAPPC10	Trafficking protein particle complex subunit 10, TRAPPC10	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045126 all species →	Family	Trafficking protein particle complex subunit TRAPPC10/Trs130	Interproscan
IPR021773 all species →	Domain	Trafficking protein particle complex subunit 11	Interproscan
IPR022233 all species →	Domain	TRAPP II complex TRAPPC10, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13251 all species →	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0034498 all species →	Biological Process	early endosome to Golgi transport	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:1990071 all species →	Cellular Component	TRAPPII protein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20307	TRAPPC10, TRS130; trafficking protein particle complex subunit 10	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.