Gene detail

Detailed information of ENSOFVP00000027645.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_027050083.1, serum response factor-like [Pocillopora damicornis]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000029764

CTTTTTAGAAAGCAAAGAAACGACAAAAAAGGTAACAGGTTTTCGAGTTCCGTCTCCATAAAAGGCCATACTACAACTAGCATAATGCAGAGCGAAGAatccacaacaacaacagatgAACTAGAGAACATGCATTACGGGGCTCAAGCACAAGGTAGCGGAGTTCTTGATCCAACTACGATAGAAGAAGGAACATTCGAAGCAGCGATGGCTGGCGAGCATGGGATGAAACGACAGGCAGACAGCGACGACGATGGCGACGCTGAAAATAGCATGTTAGTGGAAGAAAGACCCAAGAAAAAGACTAGAGGACGGGTTAAAATCGAAATGAAGTTTATCTCCAACAAACTGAGAAGATACACGACGTTTAGTAAAAGGAAAACTGGAATAATGAAAAAGGCTTACGAGCTGAGCACGCTGACGGGAACGCAAGTGATGTTGTTGGTCGCTTCAGAAACTGGGCATGTTTACACGTTCGCCACTAGAAAGTTACAGCCGATGATAACTTCGGAGAGTGGAAAAGCTCTCATTCAAACTTGTTTGAATTCGCCCGATCCTCCAGTTTCTCAGATTCCAAATCCGGACCAGAGAATGTCTGCTACGGGATACGAAGAAACAGATTTGACCTACACGGTGAACGAAAACGACGCTGAAAAAATGCAGGATCGGGGTGGCATTTTCACCTCGCAGCAAATAGACACTAATCAAGGTTTGACAGTGGGTGCATTATCAGGCACCAGTGGACCTATGACTGGCATAACAGCCTTGCCTGCGACAGGCCATTCCTTCCCCATCACCACGTACATTCCGCCGTCAAACATTCAACAGCAAGGGGGGAACAAGAATGCTTCTGTTCAATCATCGTACTCTGTTCAGGCCATGCCGGGAGGAGCCTTTACTACTATCTTTGCACCAGGCACATCGGTTCAGCTGGGTCAGACACTTACCCAAGGACAGCAACAGGGTTCTGTACAGGTTTTGACTCAGCCAGCTGTACAGATCCAGCGAGTGCAGCAGCCCCATAACCAGACAGTCCAAGTAAATGCCGTCAACCCCACTACGTCATCCAACACCATCACCTTGCCTATTGTCCAGGATACAAGCCAAACTCACGACCATAATGTCGACCACTCGTCCGGATCACAAGGTAACAACTTGCAGTCCGTTGGAACTGTTGTGGTGCCTATAGCGACCAATCAAGATGGTAGTGTTGTTTCCCTGGGAAATGTTGTTCCTTCCTCCATGATGCTGTCGTCTTCACAAGCAAGCCAAATCCCTGTGATGTACAGTGTGTATGCATCACCGTCATCTGGACTGGTGACTGTATCTAATCTCTCTGAGAGTGGCACAGATCAGACCTCGGGGCACACCCATCACTTGTCAGGAGAGGGAAGTGACATATCCCAGCAGACGCTTCCAGGATCTCTTTCCCTTGCCACAGTTCAAGTACACCAAGATATAAACTCTGGCGTGCATGCGTATGCCGCACAGGCAGTTGTCACTGAGAGCAGTGGCACTCAAACTGCCGATGATATCCATACTATTGTAAGTGATCACGGGTCTCTAACTGTGGGTACAGAGTCCGACACAGGCATTGTCAAAAATGATTTGTCTGTGCCCGTGAATTAACTTTCACTTAATTAACTATGAGTATAAACTTCTCATTTTGGAAAAGTTCAGCAGTTTAAGACCCAACATGCTAATATATAGTGTTTAGCATCATAATTATTACATTTAACACAAGGTAATAACATTGTGAGCAGAAAATGGTAAATGATATCAGCCTTGCATGTAGTAATTTATGCACCATATCTAGACTTGCTAAATTCAGAATACAACAGTAGTTACTGTTAAACTCTGAATAGAAACAAGAtttagctaggttagtaagttaGACTACTTAAATCACTAGCTATAATAAAACCCCAGAGTTTAGATAATTGGCCCTGACCAAGTCACAAGATTCAGCTGAAATCCTGCATGAAAGCTCAAAGCTAAACTCGGAAAATACATTTGAGAACTCAGTAATAACAGGCCTAAGAGCAAAGCACCAGTATCCGCTTAAATACAGTACCGGTAGATTATAAAAAGATATTATAAATTCTTTATTTCCATGTCAGATCAAGGTGTTTGTTCGTCTTTGTGGGTTTGATGACATTTCCTAAGTATCTGTTActgttaacttttcattgaagATAGAGTTCACATCCTGCAAATGGAACCTTTTATCTTTGCCAAATTAACTTAAGGTAAAACGGAAGGAAAATGTGTATATTTGTATTCTTAGCATCAGCTTCAAGTAAACATGTGGAATCTTTGATTTACCTGTGGTGTGCATCAGTTTATTCCTCAAGATCAAGAATAGGCGTACGGCACCTTTGGGAGGGGGATGACCTTCTTGAAATGGATGCACCAAGTTGTTTCTTATCAACCATCAGAATTAGTATTAAATAGGATAATAATATTACACCAATTTCAAGGACTTCTTTCTTGTTATAAATTTTTGGCAAAGAAGATGTATGTTAGAGAGGTTTGGCTTGGAGGAACCGATTCATATCAATTATCACCACTAAAAAAAGTAGTAAAATTCTTATTATAGTATTATTATTTAGTTGTTGACAGTTTCGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23790	Serum response factor OS=Xenopus laevis OX=8355 GN=srf PE=2 SV=1
P11831	Serum response factor OS=Homo sapiens OX=9606 GN=SRF PE=1 SV=1
Q90718	Serum response factor (Fragment) OS=Gallus gallus OX=9031 GN=SRF PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008301 (this species only)
Transcription factor family	SRF · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00319 all species →	SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036879 all species →	Homologous_superfamily	Transcription factor, MADS-box superfamily	Interproscan
IPR002100 all species →	Domain	Transcription factor, MADS-box	Interproscan
IPR050142 all species →	Family	MADS-box/MEF2 Transcription Factor	Interproscan
IPR033897 all species →	Domain	MADS SRF-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48019 all species →	SERUM RESPONSE FACTOR HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0010736 all species →	Molecular Function	serum response element binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0000987 all species →	Molecular Function	cis-regulatory region sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04378	SRF; serum response factor	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.