Gene detail

Detailed information of ENSOFVP00000027696.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020623396.1, protein jagged-1b-like isoform X2 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000029819

AGAGATTAATGAGTGTAGCTCAGATCCTTGTCGAAATGGCGGGAACTGTACGGACTTGATGAATGGGTTTATTTGCAAGTGCCCTCAGCCATGGAAAGGAAAACTTTGCCAATCAACGACTTCGCATTGTAATGGAAGCCCTTGTCAAAATGGAGGCATATGCACTGACACAGGAGACAACTTTCGCTGTGATTGTCAGAACGGTTTTACAGGACTTCTCTGTCAAATAGCACCCAAGCCTTGCTCGTCCAACCCATGTCAGAATGGCGGCACGTGTTTGAATTCAGGGGATGGCCACAGTTTCCGATGCGTCTGTTCAGATGTCTGGGAAGGAAATCTTTGCGAAAAAAGTGTCGACGATTGTGCTTCAAACCCCTGTCACAATGGCGCGACATGTATTGACGGAGAAGGCTGGCATTCTTGCAACTGTTCCCCCGGATTCACCGGACCAGTTTGTAAAGTCAACATTAATGAGTGTAACTCGTCACCGTGCAGCGATGGTGCAACATGCAGAGATAAAATAAACGGCTTTGAATGCATCTGTCCCCCCGGAAAATTCGGAGCACGTTGTCAAGATGACGAGCGCGACTGGAGGCACTGCCGTCTGCCTGGTGGAGACATCCTTCAGTGGCACAATACAGACATACAAGAAGACTGCAACACATGCACGTGCGTCAATGGCACACGCACGTGCACTAAGGTCGTCTGCGGTGCGCACAATTGCTGGAATATCACTCAAGCTGGCGGCTGCCCCACTGGCGGAGTCTGCGTACCGAAAAAAGCGGCCGACTGCCTCAGTCCCCCTTGTGGTCGATGGGCCGAGTGTGAAGGCGGGGCGACAAACTCTAAGCAAAGCGATTCAGGAATTGGAGACGAAGTGTGTCTTCCTAACAGTACGGACTTAAATGGCGACTGTGCAAAGATCCACATTGTGTTTAGCCGGGGTAAACTTCCCAAGGGAACTCTCGTGGAAGAACTCTGCCACCAGTTACGATATTTGCCGGCGTTGAAGAAATGGGCAAGGAAGGGAAACATTCGATTACTTTGCGAGGGCCGCGATAAGGATGGCACCACTTCTACTGTCATTGTATCAGTGGCCAGTACTCCGCGCACAGAGATAGCTGGAAAAGCAGCTGAAGATATCGCTAGATTCATCCGAGCTGTACCTTCTGATAAAGGCCGTGAAATAAATAGGACCCTTTACAATGTACTCATAGCTGTGGATGAGGTTACAGTCGAGAGATCTGTCACACTGTCTTATCACGAGGAAGAAGCCGCCCCTGATTATCTTATCCCTTTAATTGCGTCTCTTGTTGTGTTGGCTGCCATTCTGCTTCTCATACTTTGCATCAGAGGAAAGTGGCGAGAAAGACGCAGAGCGAACAGAGAAACTCGATTGGCTGCAAGAACTACattgaagaagaagagaaaTGCAACGCAGGAAAAGCCATTGACTAACGCTAGAACTTACTATAATCAGAGTTCCACCGATTCCTCAACGTCTTCCTCGATGTCAACGTCGACACATTCGACGGAGCTAAGAAACTTTGAGTACAATCGAGCGAGTTTACTCGACTCAACACCTTCCGTGTGTTCTACACCTCAGGTGCTGTCCCCGCCCCTCTCCCCTAAGGAGGAAGGCGCCAAAGATGAGTGGAGGAGATTTCGAGTGCAGCGGAACAGTACGCAAATAGAAATAATTGTATAAATAATTATTCGTGATTAATTACTATATCCTTCTAGAATTCATTTAAGAAAGGAAGTGAAAAAATACGCTATGGTTAATTTATTGTATCCACGAAAAAAAGTGTAGCTTTTGAAAGCAATTTTCTATAACTCCTAAAAGTTAAAATATGGTGGCAGaaagaatttatttattaaagacAAATGTTGTTAAAAGGCATCAGGATTCCTGATGGAGGTTTTGTTGACAGGCCAACGTGTAAATAATACAAAAAAGGTATTTAAATGGTTTTTAAAGTTGTAAATATGTATactatttaatttaatatttaaatgaCCTGGTAGTTCAGCTTGAACTGAGGTGAGTCAAACACATTCTCGTGTAAAAACCTATTCATTACAACGATTGATGTTGGTTCTGGTAATTCTTAAGAGTAAGTTTTGGAATAAGCATTTTGTAGCCAAAtagttttttaaaaataactttaaaataGACCCTAGAGTGCTGTTATCTTAAAACTGTAACCCTATGTGGTCTGTTGACAGATGAAATGGCCAAATTATTTTATATAGAACGAGGCTGCAGGCCGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97607	Protein jagged-2 (Fragment) OS=Rattus norvegicus OX=10116 GN=Jag2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR051355 all species →	Family	Notch and Slit guidance protein	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR026219 all species →	Family	Jagged/Serrate protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836 all species →	SLIT HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0008201 all species →	Molecular Function	heparin binding	Interproscan
GO:0048495 all species →	Molecular Function	Roundabout binding	Interproscan
GO:0050919 all species →	Biological Process	negative chemotaxis	Interproscan
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06052	JAG1, CD339; jagged-1	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.