Gene detail

Detailed information of ENSOFVP00000027696.1 in Cyphastrea salae

Genomic Location: :...
NR annotation: XP_020623396.1, protein jagged-1b-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSOFVT00000029819

AGAGATTAATGAGTGTAGCTCAGATCCTTGTCGAAATGGCGGGAACTGTACGGACTTGATGAATGGGTTTATTTGCAAGTGCCCTCAGCCATGGAAAGGAAAACTTTGCCAATCAACGACTTCGCATTGTAATGGAAGCCCTTGTCAAAATGGAGGCATATGCACTGACACAGGAGACAACTTTCGCTGTGATTGTCAGAACGGTTTTACAGGACTTCTCTGTCAAATAGCACCCAAGCCTTGCTCGTCCAACCCATGTCAGAATGGCGGCACGTGTTTGAATTCAGGGGATGGCCACAGTTTCCGATGCGTCTGTTCAGATGTCTGGGAAGGAAATCTTTGCGAAAAAAGTGTCGACGATTGTGCTTCAAACCCCTGTCACAATGGCGCGACATGTATTGACGGAGAAGGCTGGCATTCTTGCAACTGTTCCCCCGGATTCACCGGACCAGTTTGTAAAGTCAACATTAATGAGTGTAACTCGTCACCGTGCAGCGATGGTGCAACATGCAGAGATAAAATAAACGGCTTTGAATGCATCTGTCCCCCCGGAAAATTCGGAGCACGTTGTCAAGATGACGAGCGCGACTGGAGGCACTGCCGTCTGCCTGGTGGAGACATCCTTCAGTGGCACAATACAGACATACAAGAAGACTGCAACACATGCACGTGCGTCAATGGCACACGCACGTGCACTAAGGTCGTCTGCGGTGCGCACAATTGCTGGAATATCACTCAAGCTGGCGGCTGCCCCACTGGCGGAGTCTGCGTACCGAAAAAAGCGGCCGACTGCCTCAGTCCCCCTTGTGGTCGATGGGCCGAGTGTGAAGGCGGGGCGACAAACTCTAAGCAAAGCGATTCAGGAATTGGAGACGAAGTGTGTCTTCCTAACAGTACGGACTTAAATGGCGACTGTGCAAAGATCCACATTGTGTTTAGCCGGGGTAAACTTCCCAAGGGAACTCTCGTGGAAGAACTCTGCCACCAGTTACGATATTTGCCGGCGTTGAAGAAATGGGCAAGGAAGGGAAACATTCGATTACTTTGCGAGGGCCGCGATAAGGATGGCACCACTTCTACTGTCATTGTATCAGTGGCCAGTACTCCGCGCACAGAGATAGCTGGAAAAGCAGCTGAAGATATCGCTAGATTCATCCGAGCTGTACCTTCTGATAAAGGCCGTGAAATAAATAGGACCCTTTACAATGTACTCATAGCTGTGGATGAGGTTACAGTCGAGAGATCTGTCACACTGTCTTATCACGAGGAAGAAGCCGCCCCTGATTATCTTATCCCTTTAATTGCGTCTCTTGTTGTGTTGGCTGCCATTCTGCTTCTCATACTTTGCATCAGAGGAAAGTGGCGAGAAAGACGCAGAGCGAACAGAGAAACTCGATTGGCTGCAAGAACTACattgaagaagaagagaaaTGCAACGCAGGAAAAGCCATTGACTAACGCTAGAACTTACTATAATCAGAGTTCCACCGATTCCTCAACGTCTTCCTCGATGTCAACGTCGACACATTCGACGGAGCTAAGAAACTTTGAGTACAATCGAGCGAGTTTACTCGACTCAACACCTTCCGTGTGTTCTACACCTCAGGTGCTGTCCCCGCCCCTCTCCCCTAAGGAGGAAGGCGCCAAAGATGAGTGGAGGAGATTTCGAGTGCAGCGGAACAGTACGCAAATAGAAATAATTGTATAAATAATTATTCGTGATTAATTACTATATCCTTCTAGAATTCATTTAAGAAAGGAAGTGAAAAAATACGCTATGGTTAATTTATTGTATCCACGAAAAAAAGTGTAGCTTTTGAAAGCAATTTTCTATAACTCCTAAAAGTTAAAATATGGTGGCAGaaagaatttatttattaaagacAAATGTTGTTAAAAGGCATCAGGATTCCTGATGGAGGTTTTGTTGACAGGCCAACGTGTAAATAATACAAAAAAGGTATTTAAATGGTTTTTAAAGTTGTAAATATGTATactatttaatttaatatttaaatgaCCTGGTAGTTCAGCTTGAACTGAGGTGAGTCAAACACATTCTCGTGTAAAAACCTATTCATTACAACGATTGATGTTGGTTCTGGTAATTCTTAAGAGTAAGTTTTGGAATAAGCATTTTGTAGCCAAAtagttttttaaaaataactttaaaataGACCCTAGAGTGCTGTTATCTTAAAACTGTAACCCTATGTGGTCTGTTGACAGATGAAATGGCCAAATTATTTTATATAGAACGAGGCTGCAGGCCGC

Protein

Uniprot

Uniprot term	Description
P97607	Protein jagged-2 (Fragment) OS=Rattus norvegicus OX=10116 GN=Jag2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001007	Domain	VWFC domain	Interproscan
IPR051355	Family	Notch and Slit guidance protein	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR026219	Family	Jagged/Serrate protein	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836	SLIT HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0048495	Molecular Function	Roundabout binding	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06052	JAG1, CD339; jagged-1	-	CD molecules	ko04090	deepkoala