Gene detail

Detailed information of ENSOFVP00000027801.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020627372.1, DNA polymerase zeta catalytic subunit-like isoform X2 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000029927

GCTCCAGAAACAATACCATTGGTGATGGAGCCGGAGTCCCGTTTCTACAGCGATCCAGTCCTGGTCCTAGATTTCCAGTCTCTGTATCCCTCCATGATCATTGCATACAACTACTGTTTCTCCACCTGCCTGGGACGAGTTAGCTGTCTGTCAGAGTACGTCATAACTGAAAACAAGTATTGTGGCACAGCTGGCATAACTGTTCTTCTTTTGGCTTCCAGTTTTAAAATTATGTTGGACGAGATCCTTCAGACGCGAATCATGGTGAAGGCATCAATGAAGAGATGGAAAAGCgacaaaTCTCTCGGGCGAATGTTGGACGCTCGTCAACTGGGCTTGAAGCTGATCGCCAATGTGACATTTGGTTACACGTCAGCGCATTACTCGGGCAGAATGCCTTGTGTGGAGATCGGTGATTCCATCGTGCGAAAGGCACGCGAGACCCTGGAACGAGCCATAGATCTTGTCAATAACACCCCGCGTTGGGGCGCGCGAGTCGTGTACGGGGATACAGACAGTTTGTTTGTGTTACTCAAGGGTGCGACCAAAGAACAGGCGTTCAATATTGGTAAAGACATTGTGGATACTGTTACAGCAATGAATCCAAAGCCAGTCaagctcaagtttgaaaagGTTTATCTTCCATGTGTGTTGCAAACGAAGAAGCGCTATGTTGGATACATGTATGAGACTCTAGATCAGAAGGAGCCTGTATTTGATGCTAAAGGAATCGAGACTGTGCGAAGAGACTCCTGCCCTGCAGTAGCAAAGGTACTTGAAAAGTCGCTGCGATTCTTGTTCGAAACACGCGATCTGTCTTTGATTAAGAAGTTCGTCCAGCGACAGTGTACAAAATTGATGGAGGGACGCGCCAGTCTCCAGGATTTCACTTTCGCGAAAGAATACCGCGGAATGAAGAACTACAAACCAGGGGCATGTGTACCAGCCCTAGAGCTGACGAGACGTATGCTCAGAGAGGACCGCCGGTCAGAGCCCAGAGTGGCAGAAAGAGTCCCGTATGTAGTGGTGTACGGTAGTCCTGGTTTGCCTTTGATTCAGCTCGTCAGACGACCCCATGAAGTGCTTCAGGATCCCAGCCTTCGATTGAACGCTTCTTATTACATCACCAAACAGATCTTACCACCGCTCAATCGTGTCTTCTCTCTCATTGGCTTAGACGTGTTCACATGGTACGCAGAGCTCCCGCGTGTTGTGCGCGTAACACAAATGCCTACGGACCCAGGAGAGAGAAAAAAGGGCACTATTTCCCAGTACTTCTCTACCATGACGTGCCCAGTTTGTCAAGAGCTTACTCCAACAGATCTGTGCACCAACTGTCGGGCGAGGCCCCAAATGTCAGCTGTTTCTCTCGCTAGCCGCATGCGCAAATGGGAACGAACTCACCAACATTTAGCCGAGATATGCTACAGCTGTTGCGGGTCACGTGATACCAAGTCAAGTTGCGTATCGTTGGACTGTCCAGTGTTTTACAAGCTCGTGCTGTGCACGCGTGACCTGAAGTCGTCCCAACATTTCAGAAGGATCCTGGAAAGCTTCTAGCAACGATGCTGACGACATTACggttatgatgatgatgactttGTTGACCACAAAGACTGTAttgatgatgaaaatgatgacgACCACATAATAACGACTATGATGGaatgatagtgataatgatgatgataatgataatgataaaaaaattaacgaCTTTAACGGCTACTGACTGATGTAAATCAAGGTTATTTTTAAGTTCACGTCGTAtttgaacaaaacaaagacaaatGTTTGTCTCTCAATAGGAAAAGAACCTAAAATACGTATCCTCACAAGGAGAGTTTCCTCATACGCGAAAACAAAGATGTTAGGCCGGAAGAGTTTTAAATTTATTGAAAAGATCTATAAAGCATAAGAGTGCTCGAAATTGTTTGTATCATAGAGAAATAAATATTCGTATGTTGTGACTGTTGTTAATTGAGCTACCCAACAGATCATAAATGATGCAGAAGTAAATAaagtcccggccaaacgattgcaacaaGCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61493	DNA polymerase zeta catalytic subunit OS=Mus musculus OX=10090 GN=Rev3l PE=1 SV=3
O60673	DNA polymerase zeta catalytic subunit OS=Homo sapiens OX=9606 GN=REV3L PE=1 SV=2
Q9GSR1	DNA polymerase zeta catalytic subunit OS=Drosophila melanogaster OX=7227 GN=PolZ1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001965 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14260 all species →	zf-C4pol	C4-type zinc-finger of DNA polymerase delta	Domain	Interproscan
PF00136 all species →	DNA_pol_B	DNA polymerase family B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042087 all species →	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR030559 all species →	Family	DNA polymerase zeta catalytic subunit	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR025687 all species →	Domain	C4-type zinc-finger of DNA polymerase delta	Interproscan
IPR006172 all species →	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR006134 all species →	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR017964 all species →	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45812 all species →	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016035 all species →	Cellular Component	zeta DNA polymerase complex	Interproscan
GO:0019985 all species →	Biological Process	translesion synthesis	Interproscan
GO:0042276 all species →	Biological Process	error-prone translesion synthesis	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000027801.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.