Gene detail

Detailed information of ENSOFVP00000028378.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_027043247.1, splicing factor 3B subunit 2-like [Pocillopora damicornis]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000030550

ATGGAGGAAGAGATCCCTTCTTTGGAGGAGCTGAAAAAGTTGAAAGTTGTTGAATTAAAAGCTCGGTTATCGTCGCTTGGACTACACACCTCAGGTTTGAAGGCAGAGTTGATAGCAAGACTTCACAGTTATTTTGTATCGGTACCAAATCCTCAACTAACTCATTTCCAAGAAAGTAGCCCTCCTGAAGCTGAGCCTGAACATGCAGCTCAAGAGGGACCTATTCCCATTCAACAAGAAACCCATTTTCAAGAAAATGAAGATGCAAAACATGTGCATGTGATGTTACCAATAACACAGACTCATCTTCCAATATATCATTCAGAGCAACATTATCCTGTTATTGTGAAAACAGAGGATTTCCCTCATATAACAGGACCAATTGTAATTTCAGAGGAAAGACCACCACTAGAACCACAGACTGTTATAGGTGACAACTTGCCAGTGCATGCCGAACAACAAAGTTATGTAGAGCAAGCCGAGGAGGAAGCATCATTGCAAGAAGAATCGTTGGATCATGGTGTGGCTGGTCATGATCAGGAGCCAAGGATACTTCATTCTCAAGAAGAAGTCCCAGACACAGCTGTTTATCAGCCAGATAATATTGATGAACAAGCTCCAGATGAACAAATCCAAGATGAGCAGATTCAAGAGGAGTTCCAACATAAACAAAAGCAAGGAGCACAACTTCAAGTCGAACAACTTCAAGTGTCAGATGCTCCTTTACGTGATCATGAGCAATTCACATCAGAGGGAAATTTTCCAGCAGAAGATTCATCAACCCCTTGGATGCAGGAATCTACCCCAGTCAATGCACAACATGAAGATGAGTTTTACACACCTAATGAACAAGTTATTCCACAATCACAGGCTTATGCTCAAGAATACCAGGAAGATTTTTATGATGAAAGTGAGCCATGGGTGATGGTAGATTATCCTCCTGCGGAGGAACAGGACACTTATTTTCCTCCCGAAGACAGGGCCTATGAATCCCAGCGAGTGGAGCCGGAGGTGGCAAGTGACAGGTATCTACCACAGGAGGCAGAGGAGGAAGCTGATTACCAGTATTATGATGATGAAAAGAGGATGGACAATGAGGAGGTTGAAGAACCACAACCTGCAGAAAGCAAAgacaagaaaaagagaaagaagaagaagaaaagaaagaagaaaattgaGTTTGTTCAGGAGCAGCCACTCTATGTGGAAGAAACAGATGATGTGGAGGTCGAATATGTCACAGAGTCGATTAGTCCACTGGACCCTAACTATAGAGCATTTGCCAAGATTTTTGAAGCATTTAAGCTCTCAGATCCAGTGGAAAATGAAGCAGCACAGAAAAAGACAGACAAAAAGGAAGAAACTGTGGAGGCCAGGAAAAGTGAAGTTAAAGATCTCACAAATgaagacgatgatgatgatgacgacgatgatgatgaagacaTGGTGAAAAAAGCTGAAGATGAACAACCTAAGCTTTCCAAGAAGAAACTGAGAAAGATGAACAGACTGAGTGTGGCTGAACTAAAACAGCTAGTCCCTAGACCTGATGTGGTTGAAATGCATGACGTTACTGCCCATGATCCTAAGTTTCTTGTCTTCCTAAAGTCATGCCGTAATTCAGTTCCTGTGCCCAGACATTGGTGTTTCAAGAGGAAATATCTTCAGGGCAAAAGAGGGATTGTGAAACCAGCATTTGAACTGCCAGAATTCATCAAGAAAACTGGAATCATGGAAATGAGAGAAGCAATGCAAGAAAAGGAAGATCAAAAAACCATGAAAGCAAAGATGCGAGAGAAGGTTCGACCAAAGATGGGAAAGATTGATATTGATTATCAAAAGCTTCATGATGCCTTTTTCAAATGGCAAACAAAACCCAAGATGTTAATTCACGGGGATCTTTACTATGAGGGAAAAGAGTTTGAAACACGACTGAAAGAAAAGAAGCCAGGTGATCTGTCAGACGACCTGAGAACAGCACTTGGTATGCCCATTGGTCCTAACAATCACCTGGTTCCACCGCCATGGTTAATAGCCATGCAGAGATATGGACCTCCTCCCTCCTACCCCAACCTCAAGATCCCTGGTCTAAATGCACCCATACCTGAGGGCGCCTCGTTTGGTTATCATGCGGGGGGCTGGGGCAAGCCTCCAGTGGATGAGCAAGGGAAGCCTCTGTACGGTGACGTGTTCGGCATTCAACAGCAGGAAGCACCTGTGGTGGAGGAAGATGAACAGATTGAGAGCCAGCCCTGGGGTGAGCTGGAGTCTGAGTCGGAAGAGGAGTCTGAATCAGAGGAGGAATCTGAAGAGGAAGAAGATCAAACTGGCCTCATCACTCCAGCTGACACTGGTCTGATCACGCCTAGCGGCCTGACCTCCATACCGGCCGGCATGGAGACACCAGATATGATCGAGCTGCGAAAGAGGAAAAATATCGAGGAAGCTATGGAGACTGGTGCGGAACAACAGACCTTGTACACGGTGTTGCCGGAGAAGAGAGTGAATGTTGGCGCCGCCATGATGGGATCTGCGCATGTGTACGACATGGCGACGgcagctgctggagttcccagAAAAGCGGGAGCGCCACTGACAGAAGGCGTCGAGGTAGCACTGGATCCGAGTGAACTGGAGTTGGACCCTGCTGCTATGCAGGCCAGATACGAGGAACAGCTGAAGGAACGAGAAAGCCAACTACAAAAAGAAGACCTCAGTGACATGGTGGCCGAGCACGCTGCTAAACAAAAGAAACGCAAAAAAGCCACAGACAGTGGGAAGTCCGCCAAGAAATACAAAGAATTCAAGTTCTGA

Transcript

ENSOFVT00000030550

CATCATCCAACATGGAGGAAGAGATCCCTTCTTTGGAGGAGCTGAAAAAGTTGAAAGTTGTTGAATTAAAAGCTCGGTTATCGTCGCTTGGACTACACACCTCAGGTTTGAAGGCAGAGTTGATAGCAAGACTTCACAGTTATTTTGTATCGGTACCAAATCCTCAACTAACTCATTTCCAAGAAAGTAGCCCTCCTGAAGCTGAGCCTGAACATGCAGCTCAAGAGGGACCTATTCCCATTCAACAAGAAACCCATTTTCAAGAAAATGAAGATGCAAAACATGTGCATGTGATGTTACCAATAACACAGACTCATCTTCCAATATATCATTCAGAGCAACATTATCCTGTTATTGTGAAAACAGAGGATTTCCCTCATATAACAGGACCAATTGTAATTTCAGAGGAAAGACCACCACTAGAACCACAGACTGTTATAGGTGACAACTTGCCAGTGCATGCCGAACAACAAAGTTATGTAGAGCAAGCCGAGGAGGAAGCATCATTGCAAGAAGAATCGTTGGATCATGGTGTGGCTGGTCATGATCAGGAGCCAAGGATACTTCATTCTCAAGAAGAAGTCCCAGACACAGCTGTTTATCAGCCAGATAATATTGATGAACAAGCTCCAGATGAACAAATCCAAGATGAGCAGATTCAAGAGGAGTTCCAACATAAACAAAAGCAAGGAGCACAACTTCAAGTCGAACAACTTCAAGTGTCAGATGCTCCTTTACGTGATCATGAGCAATTCACATCAGAGGGAAATTTTCCAGCAGAAGATTCATCAACCCCTTGGATGCAGGAATCTACCCCAGTCAATGCACAACATGAAGATGAGTTTTACACACCTAATGAACAAGTTATTCCACAATCACAGGCTTATGCTCAAGAATACCAGGAAGATTTTTATGATGAAAGTGAGCCATGGGTGATGGTAGATTATCCTCCTGCGGAGGAACAGGACACTTATTTTCCTCCCGAAGACAGGGCCTATGAATCCCAGCGAGTGGAGCCGGAGGTGGCAAGTGACAGGTATCTACCACAGGAGGCAGAGGAGGAAGCTGATTACCAGTATTATGATGATGAAAAGAGGATGGACAATGAGGAGGTTGAAGAACCACAACCTGCAGAAAGCAAAgacaagaaaaagagaaagaagaagaagaaaagaaagaagaaaattgaGTTTGTTCAGGAGCAGCCACTCTATGTGGAAGAAACAGATGATGTGGAGGTCGAATATGTCACAGAGTCGATTAGTCCACTGGACCCTAACTATAGAGCATTTGCCAAGATTTTTGAAGCATTTAAGCTCTCAGATCCAGTGGAAAATGAAGCAGCACAGAAAAAGACAGACAAAAAGGAAGAAACTGTGGAGGCCAGGAAAAGTGAAGTTAAAGATCTCACAAATgaagacgatgatgatgatgacgacgatgatgatgaagacaTGGTGAAAAAAGCTGAAGATGAACAACCTAAGCTTTCCAAGAAGAAACTGAGAAAGATGAACAGACTGAGTGTGGCTGAACTAAAACAGCTAGTCCCTAGACCTGATGTGGTTGAAATGCATGACGTTACTGCCCATGATCCTAAGTTTCTTGTCTTCCTAAAGTCATGCCGTAATTCAGTTCCTGTGCCCAGACATTGGTGTTTCAAGAGGAAATATCTTCAGGGCAAAAGAGGGATTGTGAAACCAGCATTTGAACTGCCAGAATTCATCAAGAAAACTGGAATCATGGAAATGAGAGAAGCAATGCAAGAAAAGGAAGATCAAAAAACCATGAAAGCAAAGATGCGAGAGAAGGTTCGACCAAAGATGGGAAAGATTGATATTGATTATCAAAAGCTTCATGATGCCTTTTTCAAATGGCAAACAAAACCCAAGATGTTAATTCACGGGGATCTTTACTATGAGGGAAAAGAGTTTGAAACACGACTGAAAGAAAAGAAGCCAGGTGATCTGTCAGACGACCTGAGAACAGCACTTGGTATGCCCATTGGTCCTAACAATCACCTGGTTCCACCGCCATGGTTAATAGCCATGCAGAGATATGGACCTCCTCCCTCCTACCCCAACCTCAAGATCCCTGGTCTAAATGCACCCATACCTGAGGGCGCCTCGTTTGGTTATCATGCGGGGGGCTGGGGCAAGCCTCCAGTGGATGAGCAAGGGAAGCCTCTGTACGGTGACGTGTTCGGCATTCAACAGCAGGAAGCACCTGTGGTGGAGGAAGATGAACAGATTGAGAGCCAGCCCTGGGGTGAGCTGGAGTCTGAGTCGGAAGAGGAGTCTGAATCAGAGGAGGAATCTGAAGAGGAAGAAGATCAAACTGGCCTCATCACTCCAGCTGACACTGGTCTGATCACGCCTAGCGGCCTGACCTCCATACCGGCCGGCATGGAGACACCAGATATGATCGAGCTGCGAAAGAGGAAAAATATCGAGGAAGCTATGGAGACTGGTGCGGAACAACAGACCTTGTACACGGTGTTGCCGGAGAAGAGAGTGAATGTTGGCGCCGCCATGATGGGATCTGCGCATGTGTACGACATGGCGACGgcagctgctggagttcccagAAAAGCGGGAGCGCCACTGACAGAAGGCGTCGAGGTAGCACTGGATCCGAGTGAACTGGAGTTGGACCCTGCTGCTATGCAGGCCAGATACGAGGAACAGCTGAAGGAACGAGAAAGCCAACTACAAAAAGAAGACCTCAGTGACATGGTGGCCGAGCACGCTGCTAAACAAAAGAAACGCAAAAAAGCCACAGACAGTGGGAAGTCCGCCAAGAAATACAAAGAATTCAAGTTCTGATGAGAACGATGAAGTGGTCTTACTAAAAGACTTTTTTTTACTTGTACAGTTTTAGCAATAGTATACTCCAGAACGGGTAGTTTAACACCTTTATTTcccttgagttttttttttcttttaagctTATACGTcgcttacaaatacaaataagttgtaacagtaataaaaaaaaagcgaaagTCGCGAGGTCCACACATTTTAATTGTCTTAATATCTAGGCATACCCTTCACCAGCAAACTCCTTTAAACTGATTTCCAGTTAAGTTATTCAGGTTTTACTGTTAATTTATAAAATTGTTGAAATTGTAATTAGATTGAATAATTGACACAACCAAGAAATAATTATTGGTCTACCTACACGTGACTCTCGgaattgtcacgcaacatgcctAACGGACACGCTGGGTAACGACTCTGAAAAGGGTCGAGCAGAAGAAGGAAAAAAGATGACACATGAATGGTGCCAAGTTAATGAAATGCTACCTAAGCTACAAATTTGACGGTTATTTTTCCACTCTTTGACATTTGCTGCGGACGTTTTCCGGGACTTTTTCTTTCTCATTTCGGCTACATCACAAAGTTATGCTCGCTTTGATGAACTGAAAGGCAAATAGAAAGTTATTAGTTCAAACACATCCTTAGACTACACGGAAGAGTCCACGTTAATACACTGTCAGCGGTACAGGGAAAGTTTGCTTAGGGGTGGACCGTTTGAGGGGGGGCGGGGGGATTTGGTACGGGCacgattgtttttgtttttcctccTTCGGGATGTGTAGGCATCATATTCTTTCTTCGATATAACATGCTTTTCTCCGGCTCACTGCACTTGAGTGACTGGCAGATTCTTTGGTACAAGTACGCTTGCACTATTTTTTTTCCGAGATCACCCCCTTCCCTTATTCAAAAGTAATATAGTCCATCTCCTAAGTGGCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UJB0	Splicing factor 3B subunit 2 OS=Mus musculus OX=10090 GN=Sf3b2 PE=2 SV=1
Q13435	Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2
Q9UUI3	Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap145 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004489 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04037 all species →	DUF382	Domain of unknown function (DUF382)	Family	Interproscan
PF04046 all species →	PSP	PSP	Family	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007180 all species →	Domain	Domain of unknown function DUF382	Interproscan
IPR006568 all species →	Domain	PSP, proline-rich	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR052584 all species →	Family	Pre-mRNA Spliceosomal U2 snRNP Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12785 all species →	SPLICING FACTOR 3B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12829	SF3B2, SAP145, CUS1; splicing factor 3B subunit 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.