Gene detail

Detailed information of ENSOFVP00000028546.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020632505.1, transcription initiation protein SPT3 homolog isoform X1 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000030741

GTATTCTTTATGTGCTGTCAGGGCTATTTTTGCCGGTAACTTCGAACACAATATGACTAAATCTAAATCTAAAAGCAAGAAAAGCGAAAAGGGAAAGGAGAGTAACAATTCAACCAACGCTTGTGACAACAGACCCCCAAGTCGTCCACCGACTCCTGCCATTATTCAAAGTCCTGTGACACCGAGTTCCAGACTTCCAAAGCCATGGTTTCAGGGCGAAATTTTAAATATGATGTATGCCTTTGGTGACTCAAGAAAACCATCAACAGAGTCAGCCTCCCTGATTGAAGAAATTGTCCACTCACAGATGGCTAGCATGGTTGTACGAGCTGCAGACGTAACAAATATGAGAGGTGGAAGGTTTATGAGTGTCGAGGATATCATCTTTTTAATGAGAAAAGACAAGGAAAAACTCAAGAGGCTGATCAAATATCTCAACTTCAaggaaatcaaaaataaaaccCAGAAACAAACCTCACAAGAAGATGATGAAGTCTTAGAAGCTACTGTGAGTGATGTTAAAGGTAACAAGAGACGAAAGATTTCCTACGACTTTGTCAGCACGATAGACCAGACAGGCGATCTTGTGGCTTtgtttgatgatgatgatattgaTGAAGTGAAGCAAGAAAGAAATGAGAGAGCAGACCGTTTCTCACGAACTCTTGATCCTCAACAATACCTTGAATTTACAGAGTGTCGACAGGTCAACTTCAaTAAGAAAGCTGGAAAGTTCAAAGAATGGCTAGATTGTGCATCTCTTATTGACATGAAACCAAATACACCTGTGATGGATGTCTTCAGCTACCTTGCTTATGAGACAGTTGGACAGATAGTGGACTTGGCATTACTTGTGAAGAAAGATTTGGAGGAAGGTGATGTGTTGAGTCAAGCCATGCCACCTGTGTCTATTCTATCGGAAAGTCAGTCGTCAGTCATCACACCAGGAAGTGCAACGTCCACCCCTTCCACCCCTAACCACACCCCACCTGGTACCCCCACCACACCCACTACCCCATTCCTGCCAAGTCCTACCCCAAGTGGATCCAATACTACTGGGATTTCATCCAATACACAGAGTTCATCTTTAGCATCAAAACCAAAGAGCAAAAAACGGAAGCTTAAGGGATCAGGTGCAAGCTTGTCATACAGTAGTGGTGATTGCATTCAACCTCAACACATCAGAGAAGCCATCAGGAGATATAATCATTTCATAGGACCCATGGCTCCATTCTCAGCACATGCAAGACCATCACCTGGTTACAGAACATTATGCTGTTAGCTATAAAAAAACACCTTGGTGGCAAGACAAAAAGACCTCCCAGTCATAATCAAAACTGGTTTATTTTCCACATTTTTCAATGTGTACAGTTGTAATTTCATGTTTGAAAGCAGATTAAGGTTCTGTTTTCAAAGAGTTTATTTGTTAAAAGAGAGTTGTATCAGTATACAAATGTGAAGGAAAGTTCACTCCACATTGATGAAGACAGTTTCAGAGAACAgtttaaagaaaatatacaatGTAGACGTTCTACATTGTAACTACACAAGTTAGAAAAAGAACTATATGGATTGCAAAGATTCTTTGAAGAAACTGTTGTACTGCATCCACAGGCAAGTGATAGACTTTATAGCAGTTAATCTGCTGTATCAATGTCTAAGTTGCTAATAAACTGAGAAGAGTCAAACAAACTCACATTTTTGTGACATGGTTTAATTATATGTTCATTTATGTACAAATATAAAATTCTAAGTACTGCAGGTAACTTATTACAACTTCCACGGAAAAATGGTGGAGCATGAGATGCATCAGTTTGGAAACTAAATTTGTCAAACTGATGAATTGAGATGGTATAGTACAGGATCTTGTTATAAATATGTTAAGTGCGATACAACTTTATGTTGACAATACAAATAGCTCAAGAAGGGAGCAATAGTGCTTCCTTAAGCATTCTCTTCTGTTCAGGGTTGAGCTGGTTTGGGAATTCTATGTTAAACTCTATTATAAGATCTCCCTTTGTAGCTGGATCCTTAGAGATGGGCATTCCCTCACTTGGTACCACCTTCTGATAGCCTGGTCTGAAAAAGGGAGATTTTAGCACATTAGAGTACTTCTCCAGTAATTATGGAACATTTCTAACTaaaattagtagaattccactagtatactaatgcaaatgctgcaatctgattgtttgagctactcgtatactatcagccattagagtacagtcgct

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75486	Transcription initiation protein SPT3 homolog OS=Homo sapiens OX=9606 GN=SUPT3H PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004161 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02269 all species →	TFIID-18kDa	Transcription initiation factor IID, 18kD subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003195 all species →	Family	Transcription initiation factor IID, subunit 13	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11380 all species →	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0043966 all species →	Biological Process	obsolete histone H3 acetylation	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11313	SUPT3H, SPT3; transcription initiation protein SPT3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.