Gene detail

Detailed information of ENSOFVP00000028551.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020630530.1, probable E3 ubiquitin ligase complex SCF subunit sconB [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000030747

CTTTCCAGGAAAGATGAAGTACGGTCCAAAGTGCAAGAGCTGGTAGCTAGAGATGAGGAACTGAGCTCTGAACTGCAAACTATGGATAGTGTAGGAAAACAAGATGAACAAACTTTGTtgaatgaagaagaagaaacaaatTTACCAGCTATTGTACGGACTCAAGCCGAGGAATCTTCACAAGAAGTTGTCAGTGAAAATGTTCAGAGCAAAAATGATCAGGCTTCACTTAATGAACTTTGCAATCAGACTCCTGAATTAATATGCCCCAGAGAAGCTGAAGTGGAGACAGCAAATACTGCCATTACAAGAGAACCATTGATGTCATCTTCCAACAGAGCTAACATGAAGTTCTTTGTCAGGAGTTTGGAAGGCCATAATGATGTGATATGCGATGTTGCTTGTTCAGGTTCAGTTCTGGTTTCTGGAAGCCGCGACACCATGCTCAAATTATGGGATGCCGACACAGGGCGAGAGATGAGAAGCATGGGCGGACATACGGGAACTATAACATCAGTTTTTCTTTTACCAAAAAAGGGATTGTCGACAGACGATGTGCCTTCCAGCTTTCGAACTGACCAGTACTCAGTGCTCACGGGCTCTAAAGATTGCTCCATGAAAATTTGGTCCCTTTCAACTGGTCAGATCAAGCGGTCCATGTATGCCTTTTCACCCGTAGAGTGTCTGGATTGCACCAGTAATCTCACTGCAGCTGGTCTAGATGGCGGTAAGCTTGAGCTTTGGGATCTGGAGACAGGAGCCACTGTGAGATCGGTGCGCGGCCACGACGAAGATGCTGTCACAGCTGTCAAGTTCCAGGACGATTGTGTGATTACTGGCTCGGCCACAGGGGTGGTGAAGGTCTGGGACATCCGGGACAATTCTCTTAAACCTGTGCTCAGCTCGGACCAGGCTCCTGTGGACCAAACTGACGCAGGCGTGACTGTCAAGCCAAGACGCGTGCGTTGCTTAACAACAACAGAAGAAATCGTTTACTGGGGAGATGATGGCGTTAACATCAAGGCAATGGACTTGAATTCAGGTAAACTTCGTAAGATTCGTAATCACGTGGCACACTTTGGATCAACAGGTGCCATGGCGACCGCGGGCTCATGTCTTGTGAGTGCGGGATATGATCTGGACCGAGGAAATGGATACTTGAATGTTCGCAGCCTTCCCTCAGAGCAATACTTGGCAACCGTGAATGACGAAGGCACAGGAAGTATTACGTGCTTGTCATGCACGCAGACCACACGTGATCGAGTGACATTGCACAGAATGTGCACGGGAGGAGTGGAGTTGAAACTCTGGGATCAGCTGCCGAGTTCAATGGTCAAAAAACGTGCAAGACCGGAAACAAATGATGTTTACGTCACAGCCAAACATGTCCGTCGCTACACGCAGCCGGAAGTAAGCGACACAGAGAGCAGCGAAGATGAAGACGACCAACCGGAAGGGGAAGACtctgatgacgatgacgacatCAGCACTACCGGAAGTACGTCACGGTCTTGGTGCACAATATCATAACAGCGTGTCTTGGAAAATTACAGTGTGAAAAACTGATCGCCCTGTTCAGTAGAGAGGCATACGCACAAGCAAATCCCGCCTATTGAGTACTCCCTTCCCCGAGGGAAAGATGTTTGTGAGTCGAGGAATTCATGTGACTGCTGGGGGCAGAAGTCAAATGAATGTCGTCCTGGATTATACTTGTTCACTATTCCAAGCATTGGTTCCAAGATCATAGATGATCTAATGGGAAACATTCAGTGATTGCCAGTGATTTAGTCGCGAATTTTTGGTTCCCTGCCTGGCTGATTGTAAACCAGTAGAGAGAGAACGGAGGCATCATGCTTTGGTTTTCTGTTATCTCTGACGGTTTTCATTGCACGCCGTATTTGTGCACGCGGACGGCAGCCGTactgttttgaaaacatttcgtTTTCGAGATGATACTTTCTTATTATTCGTCTTCTTAGAAAGATAAAATTTTATAAACACCAAGTGTTTCTCAACTGAATTTTTGACTTGCCACGAAATGGGTGTGAATATTTCAAGACCttaaatttattgataaaataaaagatagaaaat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7TNS8	CCR4-associated factor 4 homolog OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=CAF4 PE=3 SV=1
O35242	Protein FAN OS=Mus musculus OX=10090 GN=Nsmaf PE=1 SV=2
A6ZZZ8	CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=CAF4 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003284 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849 all species →	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000028551.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.