Gene detail

Detailed information of ENSOFVP00000029140.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020612106.1, DNA ligase 3-like isoform X2 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000031433

ATGTTTGCAATTCTAAGACGTAACATTCAGCTTTGCGAGGCCAGTTCAACTTGGTATACTTATCAGCTGATTTATCGACGACTGGTTTGTGGTTTGAACATCATGGCGGATTCAGGCGGAGAGAAGCCATTTTTGGTGGAATATGCTAAGCAGGGAAGGGCCAAATGTAAAACTTGCAAGCAACAGATTGAGAAGAGTTCGACTCGAATTGGAAAATTGGTCTCAAATCCGTTCAGCGAAGACGGCGGAACGATGAAACAATGGTATCACGTTCCTTGCATTTTTGATGCCTTGACCCGAGTTCGAGCTACAACGAAGAAAATCGACAGCACTGATGATTTGGATGGATTTGGCAACCTCAAGGATGACGATCAAGAGAAAATCGTAATGGGGAAATTGCACTTAACATTCTCAAAATCTGTCCAAGCTGCTCTTCCCTTTGATAAACCAAAAACCTCTGCTGGATCAAAGTCAACTTCTTTGGGTGTTAAAAAAGCTGCTGGTTCTAGTGATGGTGGCCATAGTTCTTCTCCAGTCAAGGGTGGCAGTGACGAGAATAGCAAGGACAATTCTTTCAGAGAGTTCCGAAGGATCTGTGTTAAACTTGCTGAGGAACCAAGTTACAATGCTAAGAGCAAGATATTGTCTGATTTCTTTGAAAAGGGCAGTTCTGgagATGCATTTAATGGAGACCTTACATTATGGGTGAAGATGTTACTGCCAGGGGTAAACAAGAGGGTGTACAACTTGCAGAGCAAACAACTCATTAAACTCTTCAGCCAGATATTTGGCTGCAGTCAAGATGACATGATGACAGACTTAGAACAGGGTGATGTGTCAGAGACTGTGAGCACATTTCATGAGAGCAGTTCTTTGATAAAACCTCTCAAGAAAAGTTTACTTTCTTTACAAGATGTTGATGCTTTTCTTGATAAACTCAAGACTGTGACAAAAGAAGAAGATCAGCAAAGGGAACTTGCTAAAATCACAAGGAGGTGCACTGCCAATGACTTGAAATATGTCATTCGTCTGATCAAACATGATCTTCGAATGAACACTGGAGCAAAACATGTTTTGGATGCACTTGATCCAAATGCCTACGAGGCATTTCAAGCGTCTAATAACCTCGGCGATGTTGTACAGCATTGCCTCCAAAAGAAAGAAGCCAAGGCTGGCATTTTACCAGGAATGAGCAAAAAACTAAGCATCAGAGCTTCTTTGATGACTCCTGTCAAACCAATGTTGGCAGAAGCTTGTAAGAGTTTTTCACAAGCATTGAAAAAATGTCCAAGTGGAATGTATGCAGAGATAAAATATGATGGAGAGAGAGTCCAGGTTCACAAGAGTGGAAATGAGTTTCAGTTTTTTAGCCGCAGCCTCAAACCAGTGGTTTCACATAAGGTTGCCCCTATTAAGGATTACCTCCCAAAAGCCTGTCCCCATGGAAACAGCCTTATACTGGACAGTGagGTTCTACTAGTGGATAACAAGACTAGCAAGCCTCTTCCGTTTGGAACTCTGGGCATCCATAAgAAATCAGCATTTAAAGATGCCAGTGTGTGTTTGTTTATCTTTGATTGTCTCCAGTTTAATGATGAAAATCTTATGAAAAAgaGTATGAAGGAGAGACGAGaagttttggaaaaaaatgtcGCTGTCATCCCAAATAAAATCATGTtatcagaaacaaatttcttgAAGACAGAGAAAGAACTGTCAAAGTTAATGTCAAGAGCCATGAAAGAGGGCCTGGAAGGACTCGTACTCAAGGACGTTAATGGTATCTATGAACCAGGAAAGAGACACTGGCTGAAGATGAAAAAAGATTATCTTGAAGAGGGTGCCATGGCAGATACTGCTGACCTGGTGGTACTTGGGGCCTATTATGGAACAGGGAATAAAGGTGGTTTAATGTCAATCTTTCTGATGGGAGTCTGGGATCCAGCAACTAAACAGTGGTGTACTGTGGCCAAGTGCGGCAATGGACACGATGATAAGACCATTGAGAAACTCAATAGAGAActcaaaatgaagaaaatcagcAAGGACCCTTCCAAGGTTCCTTCCTGGCTGAATATCCATCGCAGTTTGGTTCCTGACTTTATTATCGAGGATCCAAAGAAAGCTCCAGTGTGGGAGATAACAGGAGCAGAATTCAGTAAATCAACCACACACACTGCGGCAGGAATATCGATTAGATTTCCTCGTGTGACACGGATCAGAGATGACAAAGACTGGAAAACTGCAAATGATTTGCCACATCTGAAGTCGAAGTCAGCCTGCAAGTACGGATCAAAATGCTATCAAACAAACGAGGATCACCTTCAGAGATTCACTCATCCACAGGACCATGAGAGCGACATTAGCCCGAGTAAGCAGAAGATTCTGAAGGATGTTTTTCATGGACTGACTATATTTCTCTCAAAAGATCTTGAGGATTTAGCAAAACTCAAAAGATATGTTATTGCTTACGACGGAGATTTGGTGGAGGAGTTTGAAAAGACGAGTGCGACTCACGTTGTCAGTGACACCAAGGATGGTCACACAGTAGGAGGCTCGACCAGCCTTGTTACGCCAGCTTGGATTTGGAAGTGTATCAAAAAAGGACGTGTTGTGTCCGTAAATAAATTTACACTTTGA

Transcript

ENSOFVT00000031433

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49916	DNA ligase 3 OS=Homo sapiens OX=9606 GN=LIG3 PE=1 SV=2
P97386	DNA ligase 3 OS=Mus musculus OX=10090 GN=Lig3 PE=1 SV=2
P16272	DNA ligase OS=Vaccinia virus (strain Western Reserve) OX=10254 GN=OPG180 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003047 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01068 all species →	DNA_ligase_A_M	ATP dependent DNA ligase domain	Domain	Interproscan
PF10283 all species →	zf-CCHH	PBZ domain	Domain	Interproscan
PF04675 all species →	DNA_ligase_A_N	DNA ligase N terminus	Family	Interproscan
PF04679 all species →	DNA_ligase_A_C	ATP dependent DNA ligase C terminal region	Family	Interproscan
PF16759 all species →	LIG3_BRCT	DNA ligase 3 BRCT domain	Family	Interproscan
PF00645 all species →	zf-PARP	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016059 all species →	Conserved_site	DNA ligase, ATP-dependent, conserved site	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR012310 all species →	Domain	DNA ligase, ATP-dependent, central	Interproscan
IPR050191 all species →	Family	ATP-dependent DNA ligase	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001510 all species →	Domain	Zinc finger, PARP-type	Interproscan
IPR036599 all species →	Homologous_superfamily	DNA ligase, ATP-dependent, N-terminal domain superfamily	Interproscan
IPR019406 all species →	Domain	Aprataxin and PNK-like factor, PBZ domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR012308 all species →	Domain	DNA ligase, ATP-dependent, N-terminal	Interproscan
IPR012309 all species →	Domain	DNA ligase, ATP-dependent, C-terminal	Interproscan
IPR036957 all species →	Homologous_superfamily	Zinc finger, PARP-type superfamily	Interproscan
IPR031916 all species →	Domain	DNA ligase 3, BRCT domain	Interproscan
IPR000977 all species →	Family	DNA ligase, ATP-dependent	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45674 all species →	DNA LIGASE 1/3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003909 all species →	Molecular Function	DNA ligase activity	Interproscan
GO:0003910 all species →	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006266 all species →	Biological Process	DNA ligation	Interproscan
GO:0006273 all species →	Biological Process	lagging strand elongation	Interproscan
GO:0006288 all species →	Biological Process	base-excision repair, DNA ligation	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0070421 all species →	Cellular Component	DNA ligase III-XRCC1 complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0071897 all species →	Biological Process	DNA biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10776	LIG3; DNA ligase 3	EC:6.5.1.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.