Gene detail

Detailed information of ENSOFVP00000029820.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020626324.1, elongator complex protein 5-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000032211

TCAAAATGTACCTTTTCCTCTAATAGAAGAGAAATAAAATGCTTCTTGGAGATATTATAAATGGAAAAGAAAAGTCTCACCTCGTTCTTGTCCATGACACCGTAAATCAGAATGGTAAACCTTTATTATGCTGTTTCGTCAAATCACTTCTTGAAAGCGCCGACTTTATACATGCCATACTTTGGGATATGCCACCTGAACACTTCCTTGATGCATTTGACTTGCATTTGAGAGAAAGGATTTTCTGCTATGATGGTTTCTCTGATCCTCTTGGATGGGATCTCTCAAGAAATGACTGTGATAGCAGTGGTATCTGTGTTGTCCATCAGAACTCTAACATAGCTCAAGTAGTTAAAAGTAACTTGGCGAGTCGCTCCTCCCAAAACAGCAATTCTGGTAATGTAATTAAAGTGGCTATTGTAATCAATTCCTTAAGCAGGCTGTTGCTATGGAAATCCTCATCAACAGTGTGTTCATTACTAAATCAGCTGTATTCCAATCCTCCTGACTCACAGACAGgttATCAAGTTGTTCAGGTGGTTGGTTTGGTGCACACAGATCTTCATGATGATCAGACTTTGAATGCCGTCAATTTTCTAGCTTCATCACTGCTTTGGATAACACAAGACGTTGAGCAAAAAACATCTGATCCATCAGTTAATTGGTGTAGAATTCTccacaaaagaaaaacaggaaaagtGATCAGAAAGGTTGAAAGCTTCACCATTGATGATAACTTTGAACTGACAGAACATGAAGAAAAGGATTGGAATGCTTCCTCTTCTACAGCCCATAGTGAACCACTAGCTGTTCAAGAGGTTGATCCAACTCAAAACCTCACATTCAACCTCAAACTGACAGACAATGAACGTCAAGCTCGTTCCAACCTGAAACTTCCATACATGTACCATGAAGAGAAGAAAAGCGAGGTGGCAGTTAACTCTGTAGGAGAGGGGAAAGTCTTCTACCAACCTGATGAAGCAGACGACTTTGATGAAGACGATCCTGATGACGATTTAAATatctaaacattaattttattgaGAAACTGGACAGTGTTTGTATTGAAGGAAGAGATTATTATATATTTAAGCATTAAATACAAATTTGTACTGTAGAGGTGACTTAGTGTCTCATTCTCCTTAGATCATGTTTGAATTTTACCAAGTCAAAACTTCTGCTAAACTTGTGTGTTGTAGTTTCCATATAAACCTTATGACCATACAATACAAGTATATGAATCTAAGCACCACAATGAAGAATTCTTAAGTGTATACATTGCTCTGCTGGTAACAATGAATTTTATACCCTGCAAGCAGCTGGTTAATTTCTCCTACGCCAAACCAACAATTTTACTTTAAAACTTAtattttttggaaaacaaattacTTTAAGATGAAGTAAGTGAACTGTGTGAACTTTATCCATTTTTCTTGGCTTCAAAAGATTTTGCAAGGAAGAGGACAACATTTGACACTTTTGAAAGCAGCATTTCATGTTTCATTTTTTATCTCTTCCTTCACTACCCTTTCTTCTATGGCACATAGGACTGCATGTTTAACCTATTGGTTGAAACCAAGGGAAAACCAGGATATCGTTGGCTATGAGATGCATGATATAATTATGCTGCTGTTATTtatattgtgttgttccagaaaatatccatacccctcccatggaaggtttttttagcttgaacccccaTCCCTCCGGAAAGTCCATTTTAGTGTCATACTTTCCTtcaaaaaattgggcttttgaaacccccctcccccttggaatttccattaaccttccttggggagggtatggatattttctggaactacacattcaaGTCCAAGCTTGTATTGAGAGATCtttaaaaacacatttttgatatttttaattatgaaattatttgaaattgttctactgtcaacttttttttgaaacttggcataattaacattcatgatataaacattaaaagatgcaataaaaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1A5V9	Elongator complex protein 5 OS=Danio rerio OX=7955 GN=elp5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005358 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10483 all species →	Elong_Iki1	Elongator subunit Iki1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019519 all species →	Family	Elongator complex protein 5	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15641 all species →	ELONGATOR COMPLEX PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11376	ELP5, IKI1; elongator complex protein 5	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.