Gene detail

Detailed information of ENSOFVP00000029981.1 in Cyphastrea salae

Genomic Location: chr6:31598339...31606620
NR annotation: XP_020626242.1, protein SCO1 homolog, mitochondrial-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1A4J8	Protein SCO1 homolog, mitochondrial OS=Bos taurus OX=9913 GN=SCO1 PE=2 SV=1
O75880	Protein SCO1 homolog, mitochondrial OS=Homo sapiens OX=9606 GN=SCO1 PE=1 SV=1
Q5SUC9	Protein SCO1 homolog, mitochondrial OS=Mus musculus OX=10090 GN=Sco1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006650 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02630 all species →	SCO1-SenC	SCO1/SenC	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003782 all species →	Family	Copper chaperone SCO1/SenC	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR017276 all species →	Family	Synthesis of cytochrome c oxidase, Sco1/Sco2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12151 all species →	ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0033617 all species →	Biological Process	mitochondrial cytochrome c oxidase assembly	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006878 all species →	Biological Process	intracellular copper ion homeostasis	Interproscan
GO:0008535 all species →	Biological Process	respiratory chain complex IV assembly	Interproscan
GO:0016531 all species →	Molecular Function	copper chaperone activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07152	SCO1; protein SCO1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.