Gene detail

Detailed information of ENSOFVP00000030177.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020622869.1, E3 ubiquitin-protein ligase parkin-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000032589

TGAAAATTATAGTGATGGAAATTGTTGTTCACTTGTTGCAGATTATTGTCCACTTCAGCTGTATTTTTGAACAGTTTTGACACTATAAAGCATTGCAGAGCATCCATGGGATCACGAAGACCTCAAAGACTGCCGATCTTTGTACGGTTTAACTCCAACATAAACATACCAGTACAAGTTGATCTGCATTGGAACATAGCAAGGTTAAAGGAAGAAATAGCTAGACGGCAAGGAGCAGATCCCGCAGAAATACGTATTATTTTTGCTGGGCAAGAACTTAAGGATGATCTCCAACTAAAGGATGCAGAAATCCCCAACCAAAGTGTTGTCCATGCTGTTCGTGGTGGCCGTTGGTCAGCAAGAACAGGAAAGAGTAAGACAACACCATTGAACAAAGTCAAACTTGCTACTGTTGGAGAAGAACAGGAAGATGCAGGTGCAGCTGCTGCAGCGTCTCCTCAGCGACAGGCTCAATATTATGTGTACTGCAAGACTTGTAAAACAGTGACTCCAGGAAAGTTGAGGGTCTGTTGTTCAATTTGCAAAGAAGGAGCTATTGTTCTTCATCAGGACCCCAGCAGATGGAGTGATGTATTGACATCTGGAAGCATAAGAGGCTCATGTAAAACCTCAGGATGTGGGGGAGATAAAGCGGAGTTTTACTTTAAATGTGCAATGCATCCTGCTGCCGAAGGTGACAGATGTGTTGCTCTTAATTTGATACGTTCAAACACAAGAGATATACCTTGCCTAGCCTGCACAGAGGTCAAAGATCCTGTTCTGGTTTTTCCATGTGCCGATGGACACGCCGTGTGCTTGGACTGCTTCGAAGTCTACTGCACAACAAAACTCAACGACCGACAGTTTTTGCAAAGTGACTCTTACGGGTACACGCTGCCGTGCCCTGGAAGTTCAGGTAGCTGCAACAGTGCCCTTATTTCAGAGGCGCATCATTTCCGTGTGCTCAGTGAGGATCAGTATCAGCGATATCACAGGTTTGGAGCGGAAGAGTTTGTTTTGAAGAATGGCGGTGTGTTGTGCCCAGGCCGCGGCTGCGGAATGGGTCTGTTACCAGAGCCGGACATGCGCTCTGTCAAGTGTGATGGATGCAAGctGGAGTTCTGTAAAGAATGCAAAGAACCCTTCAGACGAGGCCACTCGTGCAATCAGAACCAGTCGAACCCGACGACTGCTGCTCGACCCAGCAACTATCGAGTGAACGATGAAAACGCCAGACGAGCGCGGTGGGAGGCTGAGGCGAAACAGGTGATTGAGCGGATCAGTAAGAAGTGTCCCGGATGCAAGACAAACACAGAGAAAAATGCTGGATGCAATCACATGACTTGCCCACGGTGTCAGTTTCAATGGTGTTGGATTTGCCTTATTGCTTGGAACCCGGACTGCCAGGGCTCTCATTGGTTCTTACAGCGCTAGTGCGGTACAATCCCGGCGAGCTATCTCTTGTCCGTGACAACTGTTAGTTTAGACTGCGATTATGACATTCGTTTGGGTCGTCACTGAAGGCTGAAAACAAAGATTACGTGACAAGCACGACTGAGGCTGGTGTTCCTGCGAAGCCACAAAGATGTACCGATGGTGACAAAACGTATTCGTGGATACTTCTGCTTGAAAACTCGCGCCTTTGTTGATACATTCAATCTTTCCTTGTCCTTGTTTGTAGTTAGTGAGGTATTTACTCATCGCTTGTGATTTCCTGTGATTTGAAGACAAGTGAGTAAATCGCGAAAACAAAAAAGAGAGATTTAAAAGCTAGAACTTAGCTAACATAGCTTCTTTGGATAAGCTTTCTTGTGTTAAATACAGTTAAAATTTTAGGTGTTACATGTCGAACGATTTATTTTTTGGACGAGTTCGACGTGAGTTAACTACAGGGGAAAACTGGGAACAACTTAGGAGAAAAAAGTATTATATTCAGTGGGTCACCAAGTTACCTACTAGATCGAAACAAACGCTTCAATATGCACGAGGAATTGAATAGAAATATGCGCGCTTTATATTACGTAGAGTATTTACTGGGCGTCAAAGAATTAGGGGGGTAAACGACCGTGACTAAATTATGGAGTGCGGCTCTTCGCCTACACATTTTGTTGCGTTTCGTAGCTGTTCACTGTAAGAAAACGGCGGGAAGTTCTGGATTGTGTAAAGAAACTGGTATGTTTGTATTTGGAGTCAACCATTACTCTCTTAACATACATTTTTGGTACAAAACATTCCGGCCCTTCTTGGGCGCTCCCGTCGCGGTTGTTTAAGTTTGAAATATTCGTATTTAGTGTAAGATTTcaagaaataagaaatgtacTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60260	E3 ubiquitin-protein ligase parkin OS=Homo sapiens OX=9606 GN=PRKN PE=1 SV=2
Q9WVS6	E3 ubiquitin-protein ligase parkin OS=Mus musculus OX=10090 GN=Prkn PE=1 SV=1
Q9JK66	E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus OX=10116 GN=Prkn PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002539 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF17976 all species →	zf-RING_12	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF17978 all species →	zf-RING_14	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR047534 all species →	Domain	E3 ubiquitin-protein ligase parkin, BRcat domain	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR041565 all species →	Domain	Parkin, RING/Ubox like zinc-binding domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR047535 all species →	Domain	E3 ubiquitin-protein ligase parkin, RING finger, HC subclass	Interproscan
IPR003977 all species →	Family	E3 ubiquitin-protein ligase parkin	Interproscan
IPR041170 all species →	Domain	RING/Ubox-like zinc-binding domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR047536 all species →	Domain	E3 ubiquitin-protein ligase parkin, Rcat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04556	PARK2; parkin	EC:2.3.2.31	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.